Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02513 and H281DRAFT_02514 overlap by 4 nucleotides H281DRAFT_02514 and H281DRAFT_02515 are separated by 30 nucleotides H281DRAFT_02515 and H281DRAFT_02516 are separated by 63 nucleotides
H281DRAFT_02513: H281DRAFT_02513 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 89,268 to 90,509
_02513
H281DRAFT_02514: H281DRAFT_02514 - enoyl-CoA hydratase, at 90,506 to 91,282
_02514
H281DRAFT_02515: H281DRAFT_02515 - short chain enoyl-CoA hydratase (EC 4.2.1.17)/Enoyl-CoA hydratase (EC 4.2.1.17), at 91,313 to 92,134
_02515
H281DRAFT_02516: H281DRAFT_02516 - Nitrate/nitrite transporter NarK, at 92,198 to 93,571
_02516
Position (kb) 90
91
92 Strain fitness (log2 ratio) -1
0
1 at 89.629 kb on - strand, within H281DRAFT_02513 at 89.751 kb on - strand, within H281DRAFT_02513 at 89.869 kb on - strand, within H281DRAFT_02513 at 89.869 kb on - strand, within H281DRAFT_02513 at 89.959 kb on - strand, within H281DRAFT_02513 at 90.041 kb on - strand, within H281DRAFT_02513 at 90.041 kb on - strand, within H281DRAFT_02513 at 90.134 kb on - strand, within H281DRAFT_02513 at 90.202 kb on + strand, within H281DRAFT_02513 at 90.203 kb on - strand, within H281DRAFT_02513 at 90.250 kb on - strand, within H281DRAFT_02513 at 90.752 kb on + strand, within H281DRAFT_02514 at 90.753 kb on - strand, within H281DRAFT_02514 at 90.753 kb on - strand, within H281DRAFT_02514 at 90.753 kb on - strand, within H281DRAFT_02514 at 92.056 kb on - strand at 92.172 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 89,629 - H281DRAFT_02513 0.29 +0.9 89,751 - H281DRAFT_02513 0.39 +0.2 89,869 - H281DRAFT_02513 0.48 +1.6 89,869 - H281DRAFT_02513 0.48 +0.1 89,959 - H281DRAFT_02513 0.56 -0.3 90,041 - H281DRAFT_02513 0.62 -0.3 90,041 - H281DRAFT_02513 0.62 +0.1 90,134 - H281DRAFT_02513 0.70 -1.4 90,202 + H281DRAFT_02513 0.75 -0.7 90,203 - H281DRAFT_02513 0.75 -0.2 90,250 - H281DRAFT_02513 0.79 -0.4 90,752 + H281DRAFT_02514 0.32 +0.4 90,753 - H281DRAFT_02514 0.32 -0.3 90,753 - H281DRAFT_02514 0.32 -0.3 90,753 - H281DRAFT_02514 0.32 -0.1 92,056 - +0.4 92,172 + -1.7
Or see this region's nucleotide sequence