Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02503 and H281DRAFT_02504 are separated by 143 nucleotides H281DRAFT_02504 and H281DRAFT_02505 are separated by 222 nucleotides H281DRAFT_02505 and H281DRAFT_02506 are separated by 67 nucleotides H281DRAFT_02506 and H281DRAFT_02507 are separated by 27 nucleotides
H281DRAFT_02503: H281DRAFT_02503 - Peroxiredoxin, at 80,603 to 81,325
_02503
H281DRAFT_02504: H281DRAFT_02504 - Alkylhydroperoxidase family enzyme, contains CxxC motif, at 81,469 to 82,029
_02504
H281DRAFT_02505: H281DRAFT_02505 - hypothetical protein, at 82,252 to 82,653
_02505
H281DRAFT_02506: H281DRAFT_02506 - hypothetical protein, at 82,721 to 83,320
_02506
H281DRAFT_02507: H281DRAFT_02507 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 83,348 to 84,115
_02507
Position (kb) 82
83 Strain fitness (log2 ratio) -1
0
1 at 81.545 kb on + strand, within H281DRAFT_02504 at 81.546 kb on - strand at 81.665 kb on - strand, within H281DRAFT_02504 at 82.011 kb on - strand at 82.492 kb on + strand, within H281DRAFT_02505 at 82.558 kb on - strand, within H281DRAFT_02505 at 82.745 kb on - strand at 83.044 kb on - strand, within H281DRAFT_02506 at 83.135 kb on + strand, within H281DRAFT_02506
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 81,545 + H281DRAFT_02504 0.14 +1.0 81,546 - +0.0 81,665 - H281DRAFT_02504 0.35 -0.4 82,011 - +1.7 82,492 + H281DRAFT_02505 0.60 -0.8 82,558 - H281DRAFT_02505 0.76 -0.8 82,745 - -0.0 83,044 - H281DRAFT_02506 0.54 -0.4 83,135 + H281DRAFT_02506 0.69 +0.6
Or see this region's nucleotide sequence