Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02180 and H281DRAFT_02181 are separated by 168 nucleotides H281DRAFT_02181 and H281DRAFT_02182 are separated by 10 nucleotides
H281DRAFT_02180: H281DRAFT_02180 - amino acid/polyamine/organocation transporter, APC superfamily, at 321,756 to 323,147
_02180
H281DRAFT_02181: H281DRAFT_02181 - carbon-monoxide dehydrogenase small subunit, at 323,316 to 323,858
_02181
H281DRAFT_02182: H281DRAFT_02182 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 323,869 to 326,256
_02182
Position (kb) 323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 322.363 kb on + strand, within H281DRAFT_02180 at 322.364 kb on - strand, within H281DRAFT_02180 at 322.364 kb on - strand, within H281DRAFT_02180 at 322.557 kb on + strand, within H281DRAFT_02180 at 322.558 kb on - strand, within H281DRAFT_02180 at 322.558 kb on - strand, within H281DRAFT_02180 at 322.558 kb on - strand at 322.558 kb on - strand, within H281DRAFT_02180 at 322.726 kb on - strand, within H281DRAFT_02180 at 323.077 kb on + strand at 323.078 kb on - strand at 323.106 kb on + strand at 323.107 kb on - strand at 323.115 kb on + strand at 323.243 kb on + strand at 323.502 kb on - strand, within H281DRAFT_02181 at 323.624 kb on + strand, within H281DRAFT_02181 at 323.624 kb on + strand, within H281DRAFT_02181 at 323.624 kb on + strand, within H281DRAFT_02181 at 323.734 kb on - strand, within H281DRAFT_02181 at 323.916 kb on + strand at 323.916 kb on + strand at 323.953 kb on + strand at 323.987 kb on - strand at 323.987 kb on - strand at 323.987 kb on - strand at 323.987 kb on - strand at 324.192 kb on + strand, within H281DRAFT_02182 at 324.192 kb on + strand, within H281DRAFT_02182 at 324.286 kb on + strand, within H281DRAFT_02182 at 324.287 kb on - strand, within H281DRAFT_02182 at 324.376 kb on + strand, within H281DRAFT_02182 at 324.376 kb on + strand, within H281DRAFT_02182 at 324.376 kb on + strand, within H281DRAFT_02182 at 324.377 kb on - strand, within H281DRAFT_02182 at 324.508 kb on + strand, within H281DRAFT_02182 at 324.508 kb on + strand, within H281DRAFT_02182 at 324.529 kb on + strand, within H281DRAFT_02182 at 324.539 kb on - strand, within H281DRAFT_02182 at 324.572 kb on + strand, within H281DRAFT_02182 at 324.573 kb on - strand, within H281DRAFT_02182 at 324.573 kb on - strand, within H281DRAFT_02182 at 324.573 kb on - strand, within H281DRAFT_02182 at 324.667 kb on + strand, within H281DRAFT_02182
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 322,363 + H281DRAFT_02180 0.44 +0.3 322,364 - H281DRAFT_02180 0.44 -0.5 322,364 - H281DRAFT_02180 0.44 +1.0 322,557 + H281DRAFT_02180 0.58 +1.4 322,558 - H281DRAFT_02180 0.58 -0.3 322,558 - H281DRAFT_02180 0.58 +0.2 322,558 - +3.1 322,558 - H281DRAFT_02180 0.58 +0.1 322,726 - H281DRAFT_02180 0.70 -0.2 323,077 + -0.2 323,078 - -0.3 323,106 + -0.7 323,107 - +1.0 323,115 + +1.2 323,243 + +1.4 323,502 - H281DRAFT_02181 0.34 -0.4 323,624 + H281DRAFT_02181 0.57 +0.8 323,624 + H281DRAFT_02181 0.57 -0.5 323,624 + H281DRAFT_02181 0.57 -2.4 323,734 - H281DRAFT_02181 0.77 -3.4 323,916 + -1.3 323,916 + -0.1 323,953 + -0.3 323,987 - -0.0 323,987 - +1.4 323,987 - -0.2 323,987 - +1.1 324,192 + H281DRAFT_02182 0.14 +0.9 324,192 + H281DRAFT_02182 0.14 -0.7 324,286 + H281DRAFT_02182 0.17 -0.9 324,287 - H281DRAFT_02182 0.18 -0.5 324,376 + H281DRAFT_02182 0.21 -0.9 324,376 + H281DRAFT_02182 0.21 +0.0 324,376 + H281DRAFT_02182 0.21 -0.2 324,377 - H281DRAFT_02182 0.21 +0.7 324,508 + H281DRAFT_02182 0.27 +0.5 324,508 + H281DRAFT_02182 0.27 -0.2 324,529 + H281DRAFT_02182 0.28 -0.9 324,539 - H281DRAFT_02182 0.28 -0.2 324,572 + H281DRAFT_02182 0.29 +0.2 324,573 - H281DRAFT_02182 0.29 -0.5 324,573 - H281DRAFT_02182 0.29 -0.9 324,573 - H281DRAFT_02182 0.29 +0.0 324,667 + H281DRAFT_02182 0.33 +0.2
Or see this region's nucleotide sequence