Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02054 and H281DRAFT_02055 are separated by 334 nucleotides H281DRAFT_02055 and H281DRAFT_02056 are separated by 8 nucleotides H281DRAFT_02056 and H281DRAFT_02057 are separated by 180 nucleotides
H281DRAFT_02054: H281DRAFT_02054 - penicillin-binding protein 6. Serine peptidase. MEROPS family S11, at 176,886 to 178,115
_02054
H281DRAFT_02055: H281DRAFT_02055 - hypothetical protein, at 178,450 to 179,094
_02055
H281DRAFT_02056: H281DRAFT_02056 - (2Fe-2S) ferredoxin, at 179,103 to 179,426
_02056
H281DRAFT_02057: H281DRAFT_02057 - VanZ like family protein, at 179,607 to 180,770
_02057
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 177.454 kb on + strand, within H281DRAFT_02054 at 177.454 kb on + strand, within H281DRAFT_02054 at 177.455 kb on - strand, within H281DRAFT_02054 at 177.455 kb on - strand, within H281DRAFT_02054 at 177.484 kb on + strand, within H281DRAFT_02054 at 177.484 kb on + strand, within H281DRAFT_02054 at 177.484 kb on + strand, within H281DRAFT_02054 at 177.485 kb on - strand, within H281DRAFT_02054 at 177.485 kb on - strand, within H281DRAFT_02054 at 177.487 kb on + strand, within H281DRAFT_02054 at 177.547 kb on + strand, within H281DRAFT_02054 at 177.547 kb on + strand, within H281DRAFT_02054 at 177.548 kb on - strand, within H281DRAFT_02054 at 177.548 kb on - strand, within H281DRAFT_02054 at 177.548 kb on - strand, within H281DRAFT_02054 at 177.712 kb on + strand, within H281DRAFT_02054 at 177.856 kb on + strand, within H281DRAFT_02054 at 177.856 kb on + strand, within H281DRAFT_02054 at 178.051 kb on - strand at 178.116 kb on - strand at 178.116 kb on - strand at 178.134 kb on + strand at 178.134 kb on + strand at 178.134 kb on + strand at 178.135 kb on - strand at 178.135 kb on - strand at 178.135 kb on - strand at 178.136 kb on + strand at 178.201 kb on - strand at 178.265 kb on + strand at 178.298 kb on - strand at 178.353 kb on + strand at 178.353 kb on + strand at 178.355 kb on + strand at 178.355 kb on + strand at 178.355 kb on + strand at 178.355 kb on + strand at 178.355 kb on + strand at 178.356 kb on - strand at 178.356 kb on - strand at 178.364 kb on + strand at 178.415 kb on - strand at 178.420 kb on + strand at 178.485 kb on + strand at 178.883 kb on + strand, within H281DRAFT_02055 at 178.883 kb on + strand, within H281DRAFT_02055 at 178.884 kb on - strand, within H281DRAFT_02055 at 178.884 kb on - strand, within H281DRAFT_02055 at 178.884 kb on - strand, within H281DRAFT_02055 at 178.892 kb on + strand, within H281DRAFT_02055 at 179.072 kb on + strand at 179.072 kb on - strand at 179.082 kb on + strand at 179.082 kb on + strand at 179.082 kb on + strand at 179.083 kb on - strand at 179.083 kb on - strand at 179.104 kb on + strand at 179.188 kb on + strand, within H281DRAFT_02056 at 179.188 kb on + strand, within H281DRAFT_02056 at 179.188 kb on + strand, within H281DRAFT_02056 at 179.188 kb on + strand, within H281DRAFT_02056 at 179.189 kb on - strand, within H281DRAFT_02056 at 179.189 kb on - strand, within H281DRAFT_02056 at 179.189 kb on - strand, within H281DRAFT_02056 at 179.189 kb on - strand, within H281DRAFT_02056 at 179.189 kb on - strand, within H281DRAFT_02056 at 179.195 kb on - strand, within H281DRAFT_02056 at 179.320 kb on + strand, within H281DRAFT_02056 at 179.387 kb on + strand at 179.407 kb on + strand at 179.407 kb on + strand at 179.408 kb on - strand at 179.408 kb on - strand at 179.408 kb on - strand at 179.408 kb on - strand at 179.413 kb on + strand at 179.432 kb on - strand at 179.432 kb on - strand at 179.460 kb on + strand at 179.461 kb on - strand at 179.566 kb on + strand at 179.566 kb on + strand at 179.566 kb on + strand at 179.608 kb on + strand at 179.608 kb on + strand at 179.609 kb on - strand at 179.609 kb on - strand at 179.957 kb on + strand, within H281DRAFT_02057 at 179.958 kb on - strand, within H281DRAFT_02057 at 179.991 kb on - strand, within H281DRAFT_02057 at 179.991 kb on - strand, within H281DRAFT_02057 at 179.994 kb on + strand, within H281DRAFT_02057 at 179.994 kb on + strand, within H281DRAFT_02057 at 179.994 kb on + strand, within H281DRAFT_02057 at 179.994 kb on + strand, within H281DRAFT_02057 at 179.995 kb on - strand, within H281DRAFT_02057 at 179.995 kb on - strand, within H281DRAFT_02057
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 177,454 + H281DRAFT_02054 0.46 -2.3 177,454 + H281DRAFT_02054 0.46 +0.3 177,455 - H281DRAFT_02054 0.46 -1.3 177,455 - H281DRAFT_02054 0.46 +0.0 177,484 + H281DRAFT_02054 0.49 -0.5 177,484 + H281DRAFT_02054 0.49 -0.3 177,484 + H281DRAFT_02054 0.49 +0.0 177,485 - H281DRAFT_02054 0.49 -1.6 177,485 - H281DRAFT_02054 0.49 -0.6 177,487 + H281DRAFT_02054 0.49 -1.2 177,547 + H281DRAFT_02054 0.54 -2.2 177,547 + H281DRAFT_02054 0.54 -1.1 177,548 - H281DRAFT_02054 0.54 -0.8 177,548 - H281DRAFT_02054 0.54 -3.0 177,548 - H281DRAFT_02054 0.54 +1.0 177,712 + H281DRAFT_02054 0.67 -0.7 177,856 + H281DRAFT_02054 0.79 -2.3 177,856 + H281DRAFT_02054 0.79 -0.6 178,051 - -1.6 178,116 - -0.8 178,116 - -1.3 178,134 + -2.7 178,134 + -0.1 178,134 + -0.7 178,135 - +0.7 178,135 - -0.6 178,135 - -1.3 178,136 + -2.7 178,201 - +0.2 178,265 + +0.8 178,298 - +0.4 178,353 + -1.1 178,353 + -0.2 178,355 + -0.2 178,355 + -0.5 178,355 + -0.0 178,355 + -2.8 178,355 + -0.2 178,356 - -0.2 178,356 - +0.1 178,364 + -0.9 178,415 - -0.3 178,420 + +0.4 178,485 + +2.0 178,883 + H281DRAFT_02055 0.67 -0.1 178,883 + H281DRAFT_02055 0.67 +0.1 178,884 - H281DRAFT_02055 0.67 +0.3 178,884 - H281DRAFT_02055 0.67 -0.2 178,884 - H281DRAFT_02055 0.67 -0.5 178,892 + H281DRAFT_02055 0.69 -0.6 179,072 + -0.5 179,072 - -0.5 179,082 + +1.0 179,082 + -0.5 179,082 + -1.6 179,083 - -1.4 179,083 - +0.8 179,104 + +0.5 179,188 + H281DRAFT_02056 0.26 -0.6 179,188 + H281DRAFT_02056 0.26 +1.0 179,188 + H281DRAFT_02056 0.26 +1.5 179,188 + H281DRAFT_02056 0.26 -0.2 179,189 - H281DRAFT_02056 0.27 -0.8 179,189 - H281DRAFT_02056 0.27 +0.2 179,189 - H281DRAFT_02056 0.27 -1.4 179,189 - H281DRAFT_02056 0.27 -0.1 179,189 - H281DRAFT_02056 0.27 +0.4 179,195 - H281DRAFT_02056 0.28 -2.8 179,320 + H281DRAFT_02056 0.67 -0.4 179,387 + +0.0 179,407 + +2.6 179,407 + +1.2 179,408 - -0.1 179,408 - -0.6 179,408 - -0.5 179,408 - -0.1 179,413 + +0.2 179,432 - +0.2 179,432 - +1.0 179,460 + +1.0 179,461 - +1.4 179,566 + +0.2 179,566 + +0.4 179,566 + -0.6 179,608 + +0.2 179,608 + +0.4 179,609 - -0.4 179,609 - +0.6 179,957 + H281DRAFT_02057 0.30 +1.4 179,958 - H281DRAFT_02057 0.30 +0.2 179,991 - H281DRAFT_02057 0.33 +0.8 179,991 - H281DRAFT_02057 0.33 -0.6 179,994 + H281DRAFT_02057 0.33 +0.7 179,994 + H281DRAFT_02057 0.33 -0.1 179,994 + H281DRAFT_02057 0.33 +0.1 179,994 + H281DRAFT_02057 0.33 -0.3 179,995 - H281DRAFT_02057 0.33 -1.6 179,995 - H281DRAFT_02057 0.33 -1.6
Or see this region's nucleotide sequence