Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01966 and H281DRAFT_01967 are separated by 201 nucleotides H281DRAFT_01967 and H281DRAFT_01968 are separated by 112 nucleotides H281DRAFT_01968 and H281DRAFT_01969 are separated by 242 nucleotides
H281DRAFT_01966: H281DRAFT_01966 - Site-specific recombinase XerD, at 84,704 to 85,690
_01966
H281DRAFT_01967: H281DRAFT_01967 - Phosphopantetheine adenylyltransferase, at 85,892 to 86,407
_01967
H281DRAFT_01968: H281DRAFT_01968 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 86,520 to 87,134
_01968
H281DRAFT_01969: H281DRAFT_01969 - signal recognition particle-docking protein FtsY, at 87,377 to 88,567
_01969
Position (kb) 86
87
88 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 85.528 kb on + strand, within H281DRAFT_01966 at 85.695 kb on - strand at 85.727 kb on - strand at 85.749 kb on + strand at 85.749 kb on + strand at 85.750 kb on - strand at 85.750 kb on - strand at 85.750 kb on - strand at 85.828 kb on + strand at 85.828 kb on + strand at 85.828 kb on + strand at 85.829 kb on - strand at 85.829 kb on - strand at 85.829 kb on - strand at 85.829 kb on - strand at 86.522 kb on - strand at 86.522 kb on - strand at 86.522 kb on - strand at 86.640 kb on + strand, within H281DRAFT_01968 at 86.640 kb on + strand, within H281DRAFT_01968 at 86.640 kb on + strand, within H281DRAFT_01968 at 86.640 kb on + strand, within H281DRAFT_01968 at 86.640 kb on + strand, within H281DRAFT_01968 at 86.640 kb on + strand, within H281DRAFT_01968 at 86.641 kb on - strand, within H281DRAFT_01968 at 86.641 kb on - strand, within H281DRAFT_01968 at 86.641 kb on - strand, within H281DRAFT_01968 at 86.644 kb on + strand, within H281DRAFT_01968 at 86.644 kb on + strand, within H281DRAFT_01968 at 86.645 kb on - strand, within H281DRAFT_01968 at 86.701 kb on - strand, within H281DRAFT_01968 at 86.731 kb on - strand, within H281DRAFT_01968 at 86.731 kb on - strand, within H281DRAFT_01968 at 86.871 kb on + strand, within H281DRAFT_01968 at 87.093 kb on + strand at 87.200 kb on + strand at 87.242 kb on + strand at 87.242 kb on + strand at 87.242 kb on + strand at 87.242 kb on + strand at 87.242 kb on + strand at 87.243 kb on - strand at 87.243 kb on - strand at 87.243 kb on - strand at 87.243 kb on - strand at 87.243 kb on - strand at 87.243 kb on - strand at 87.243 kb on - strand at 87.243 kb on - strand at 87.243 kb on - strand at 87.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 85,528 + H281DRAFT_01966 0.83 +0.0 85,695 - +0.5 85,727 - -0.3 85,749 + +0.4 85,749 + -1.2 85,750 - +0.2 85,750 - -0.0 85,750 - +1.0 85,828 + -0.3 85,828 + -0.4 85,828 + -0.1 85,829 - +0.5 85,829 - +0.5 85,829 - -1.2 85,829 - +0.2 86,522 - +0.6 86,522 - -0.3 86,522 - -0.2 86,640 + H281DRAFT_01968 0.20 -0.6 86,640 + H281DRAFT_01968 0.20 -1.6 86,640 + H281DRAFT_01968 0.20 -1.2 86,640 + H281DRAFT_01968 0.20 +1.0 86,640 + H281DRAFT_01968 0.20 -0.5 86,640 + H281DRAFT_01968 0.20 -2.3 86,641 - H281DRAFT_01968 0.20 -1.2 86,641 - H281DRAFT_01968 0.20 -0.4 86,641 - H281DRAFT_01968 0.20 -0.6 86,644 + H281DRAFT_01968 0.20 -1.0 86,644 + H281DRAFT_01968 0.20 +1.0 86,645 - H281DRAFT_01968 0.20 -1.6 86,701 - H281DRAFT_01968 0.29 +0.4 86,731 - H281DRAFT_01968 0.34 -2.5 86,731 - H281DRAFT_01968 0.34 -0.7 86,871 + H281DRAFT_01968 0.57 -0.9 87,093 + -2.8 87,200 + -0.4 87,242 + +1.0 87,242 + +0.8 87,242 + -0.3 87,242 + +1.4 87,242 + +0.9 87,243 - -0.0 87,243 - +0.8 87,243 - -1.0 87,243 - +0.4 87,243 - -0.1 87,243 - +2.4 87,243 - -0.0 87,243 - +2.5 87,243 - +0.6 87,267 - +0.7
Or see this region's nucleotide sequence