Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01946 and H281DRAFT_01947 are separated by 249 nucleotides H281DRAFT_01947 and H281DRAFT_01948 are separated by 8 nucleotides H281DRAFT_01948 and H281DRAFT_01949 are separated by 550 nucleotides
H281DRAFT_01946: H281DRAFT_01946 - hypothetical protein, at 65,053 to 65,724
_01946
H281DRAFT_01947: H281DRAFT_01947 - hypothetical protein, at 65,974 to 66,240
_01947
H281DRAFT_01948: H281DRAFT_01948 - Tetratricopeptide repeat-containing protein, at 66,249 to 68,051
_01948
H281DRAFT_01949: H281DRAFT_01949 - hypothetical protein, at 68,602 to 69,258
_01949
Position (kb) 66
67
68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 65.263 kb on + strand, within H281DRAFT_01946 at 65.263 kb on + strand, within H281DRAFT_01946 at 65.264 kb on - strand, within H281DRAFT_01946 at 65.264 kb on - strand, within H281DRAFT_01946 at 65.320 kb on + strand, within H281DRAFT_01946 at 65.320 kb on + strand, within H281DRAFT_01946 at 65.320 kb on + strand, within H281DRAFT_01946 at 65.320 kb on + strand, within H281DRAFT_01946 at 65.341 kb on + strand, within H281DRAFT_01946 at 65.341 kb on + strand, within H281DRAFT_01946 at 65.354 kb on + strand, within H281DRAFT_01946 at 65.355 kb on - strand at 65.355 kb on - strand, within H281DRAFT_01946 at 65.462 kb on + strand, within H281DRAFT_01946 at 65.527 kb on - strand, within H281DRAFT_01946 at 65.743 kb on + strand at 65.743 kb on + strand at 65.811 kb on + strand at 65.811 kb on + strand at 65.811 kb on + strand at 65.812 kb on - strand at 65.812 kb on - strand at 65.812 kb on - strand at 65.919 kb on + strand at 65.919 kb on + strand at 65.919 kb on + strand at 65.920 kb on - strand at 65.920 kb on - strand at 65.920 kb on - strand at 65.959 kb on - strand at 65.986 kb on + strand at 65.986 kb on + strand at 65.986 kb on + strand at 65.987 kb on - strand at 65.987 kb on - strand at 66.121 kb on + strand, within H281DRAFT_01947 at 66.121 kb on + strand, within H281DRAFT_01947 at 66.122 kb on - strand, within H281DRAFT_01947 at 66.140 kb on + strand, within H281DRAFT_01947 at 66.140 kb on + strand, within H281DRAFT_01947 at 66.140 kb on + strand, within H281DRAFT_01947 at 66.141 kb on - strand, within H281DRAFT_01947 at 66.212 kb on - strand, within H281DRAFT_01947 at 66.234 kb on + strand at 66.234 kb on + strand at 66.235 kb on - strand at 66.235 kb on - strand at 66.318 kb on + strand at 66.371 kb on + strand at 66.371 kb on + strand at 66.371 kb on + strand at 66.371 kb on + strand at 66.371 kb on + strand at 66.372 kb on - strand at 66.421 kb on - strand at 66.508 kb on - strand, within H281DRAFT_01948 at 66.508 kb on - strand, within H281DRAFT_01948 at 66.554 kb on + strand, within H281DRAFT_01948 at 66.580 kb on - strand, within H281DRAFT_01948 at 66.580 kb on - strand, within H281DRAFT_01948 at 66.580 kb on - strand, within H281DRAFT_01948 at 66.580 kb on - strand, within H281DRAFT_01948 at 66.580 kb on - strand, within H281DRAFT_01948 at 66.627 kb on + strand, within H281DRAFT_01948 at 66.711 kb on + strand, within H281DRAFT_01948 at 66.720 kb on + strand, within H281DRAFT_01948 at 66.857 kb on - strand, within H281DRAFT_01948 at 66.857 kb on - strand, within H281DRAFT_01948 at 66.857 kb on - strand, within H281DRAFT_01948 at 66.860 kb on + strand at 66.860 kb on + strand, within H281DRAFT_01948 at 66.861 kb on - strand, within H281DRAFT_01948 at 66.862 kb on + strand, within H281DRAFT_01948 at 66.862 kb on + strand, within H281DRAFT_01948 at 66.863 kb on - strand, within H281DRAFT_01948 at 66.863 kb on - strand, within H281DRAFT_01948 at 66.868 kb on + strand, within H281DRAFT_01948 at 66.868 kb on + strand, within H281DRAFT_01948 at 66.868 kb on + strand, within H281DRAFT_01948 at 66.869 kb on - strand, within H281DRAFT_01948 at 66.869 kb on - strand, within H281DRAFT_01948 at 66.876 kb on - strand, within H281DRAFT_01948 at 66.953 kb on + strand, within H281DRAFT_01948 at 66.954 kb on - strand, within H281DRAFT_01948 at 67.115 kb on + strand, within H281DRAFT_01948 at 67.116 kb on - strand, within H281DRAFT_01948 at 67.116 kb on - strand, within H281DRAFT_01948 at 67.139 kb on + strand, within H281DRAFT_01948 at 67.139 kb on + strand, within H281DRAFT_01948 at 67.140 kb on - strand, within H281DRAFT_01948 at 67.140 kb on - strand, within H281DRAFT_01948 at 67.192 kb on + strand, within H281DRAFT_01948 at 67.193 kb on - strand, within H281DRAFT_01948 at 67.193 kb on - strand, within H281DRAFT_01948 at 67.193 kb on - strand, within H281DRAFT_01948 at 67.193 kb on - strand, within H281DRAFT_01948 at 67.200 kb on - strand, within H281DRAFT_01948 at 67.210 kb on + strand, within H281DRAFT_01948 at 67.478 kb on + strand, within H281DRAFT_01948 at 67.760 kb on + strand, within H281DRAFT_01948 at 67.760 kb on + strand, within H281DRAFT_01948 at 67.761 kb on - strand, within H281DRAFT_01948 at 67.761 kb on - strand, within H281DRAFT_01948 at 67.780 kb on - strand, within H281DRAFT_01948 at 67.781 kb on + strand, within H281DRAFT_01948 at 67.781 kb on + strand, within H281DRAFT_01948 at 67.879 kb on - strand at 67.879 kb on - strand at 67.966 kb on - strand at 68.035 kb on + strand at 68.036 kb on - strand at 68.036 kb on - strand at 68.050 kb on - strand at 68.079 kb on + strand at 68.079 kb on + strand at 68.079 kb on + strand at 68.079 kb on + strand at 68.079 kb on + strand at 68.079 kb on + strand at 68.080 kb on - strand at 68.080 kb on - strand at 68.080 kb on - strand at 68.080 kb on - strand at 68.106 kb on + strand at 68.106 kb on + strand at 68.106 kb on + strand at 68.107 kb on - strand at 68.107 kb on - strand at 68.107 kb on - strand at 68.110 kb on + strand at 68.111 kb on - strand at 68.111 kb on - strand at 68.123 kb on + strand at 68.124 kb on - strand at 68.136 kb on - strand at 68.216 kb on - strand at 68.285 kb on + strand at 68.285 kb on + strand at 68.285 kb on + strand at 68.286 kb on - strand at 68.286 kb on - strand at 68.328 kb on + strand at 68.328 kb on + strand at 68.329 kb on - strand at 68.331 kb on + strand at 68.351 kb on + strand at 68.351 kb on + strand at 68.351 kb on + strand at 68.352 kb on - strand at 68.352 kb on - strand at 68.353 kb on + strand at 68.354 kb on - strand at 68.403 kb on + strand at 68.403 kb on + strand at 68.403 kb on + strand at 68.403 kb on + strand at 68.404 kb on - strand at 68.404 kb on - strand at 68.404 kb on - strand at 68.404 kb on - strand at 68.404 kb on - strand at 68.404 kb on - strand at 68.404 kb on - strand at 68.404 kb on - strand at 68.404 kb on - strand at 68.474 kb on + strand at 68.475 kb on - strand at 68.574 kb on - strand at 68.574 kb on - strand at 68.597 kb on + strand at 68.597 kb on + strand at 68.598 kb on - strand at 68.598 kb on - strand at 68.598 kb on - strand at 68.598 kb on - strand at 68.601 kb on + strand at 68.601 kb on + strand at 68.602 kb on - strand at 68.602 kb on - strand at 68.602 kb on - strand at 68.602 kb on - strand at 68.602 kb on - strand at 68.602 kb on - strand at 68.602 kb on - strand at 68.697 kb on + strand, within H281DRAFT_01949 at 68.698 kb on - strand, within H281DRAFT_01949 at 68.698 kb on - strand, within H281DRAFT_01949 at 68.717 kb on + strand, within H281DRAFT_01949 at 68.718 kb on - strand at 68.718 kb on - strand, within H281DRAFT_01949 at 68.808 kb on + strand, within H281DRAFT_01949 at 68.808 kb on + strand, within H281DRAFT_01949 at 68.808 kb on + strand, within H281DRAFT_01949 at 68.808 kb on + strand, within H281DRAFT_01949 at 68.809 kb on - strand, within H281DRAFT_01949 at 68.809 kb on - strand at 68.857 kb on + strand, within H281DRAFT_01949 at 68.857 kb on + strand, within H281DRAFT_01949 at 68.857 kb on + strand, within H281DRAFT_01949 at 68.857 kb on + strand, within H281DRAFT_01949 at 68.858 kb on - strand, within H281DRAFT_01949 at 68.858 kb on - strand, within H281DRAFT_01949 at 68.858 kb on - strand, within H281DRAFT_01949 at 68.858 kb on - strand, within H281DRAFT_01949 at 68.858 kb on - strand, within H281DRAFT_01949 at 68.858 kb on - strand, within H281DRAFT_01949 at 68.858 kb on - strand, within H281DRAFT_01949 at 68.868 kb on + strand, within H281DRAFT_01949 at 68.869 kb on - strand, within H281DRAFT_01949 at 68.887 kb on + strand, within H281DRAFT_01949 at 68.897 kb on + strand, within H281DRAFT_01949 at 69.022 kb on - strand, within H281DRAFT_01949 at 69.022 kb on - strand, within H281DRAFT_01949
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 65,263 + H281DRAFT_01946 0.31 +0.0 65,263 + H281DRAFT_01946 0.31 +0.3 65,264 - H281DRAFT_01946 0.31 -0.1 65,264 - H281DRAFT_01946 0.31 +0.5 65,320 + H281DRAFT_01946 0.40 -1.0 65,320 + H281DRAFT_01946 0.40 +0.0 65,320 + H281DRAFT_01946 0.40 +0.7 65,320 + H281DRAFT_01946 0.40 -1.1 65,341 + H281DRAFT_01946 0.43 +1.7 65,341 + H281DRAFT_01946 0.43 +0.2 65,354 + H281DRAFT_01946 0.45 +0.2 65,355 - +0.3 65,355 - H281DRAFT_01946 0.45 +1.0 65,462 + H281DRAFT_01946 0.61 -1.0 65,527 - H281DRAFT_01946 0.71 -0.2 65,743 + -0.1 65,743 + -0.5 65,811 + -0.5 65,811 + -0.5 65,811 + +0.3 65,812 - +0.4 65,812 - +0.5 65,812 - +0.2 65,919 + +0.4 65,919 + +0.2 65,919 + -1.0 65,920 - +0.3 65,920 - +0.1 65,920 - +0.1 65,959 - -0.1 65,986 + +0.4 65,986 + -0.5 65,986 + +0.3 65,987 - -0.3 65,987 - +0.1 66,121 + H281DRAFT_01947 0.55 -0.3 66,121 + H281DRAFT_01947 0.55 -0.2 66,122 - H281DRAFT_01947 0.55 +0.1 66,140 + H281DRAFT_01947 0.62 -0.3 66,140 + H281DRAFT_01947 0.62 -1.1 66,140 + H281DRAFT_01947 0.62 -0.2 66,141 - H281DRAFT_01947 0.63 -1.1 66,212 - H281DRAFT_01947 0.89 -1.2 66,234 + -1.1 66,234 + -1.2 66,235 - +0.1 66,235 - +0.4 66,318 + +0.4 66,371 + -0.3 66,371 + +0.1 66,371 + +0.0 66,371 + -0.5 66,371 + -0.2 66,372 - -0.5 66,421 - +0.5 66,508 - H281DRAFT_01948 0.14 +0.3 66,508 - H281DRAFT_01948 0.14 +0.1 66,554 + H281DRAFT_01948 0.17 -0.4 66,580 - H281DRAFT_01948 0.18 -0.2 66,580 - H281DRAFT_01948 0.18 +0.5 66,580 - H281DRAFT_01948 0.18 -0.0 66,580 - H281DRAFT_01948 0.18 +0.7 66,580 - H281DRAFT_01948 0.18 +0.8 66,627 + H281DRAFT_01948 0.21 -0.2 66,711 + H281DRAFT_01948 0.26 +0.0 66,720 + H281DRAFT_01948 0.26 -0.9 66,857 - H281DRAFT_01948 0.34 -0.5 66,857 - H281DRAFT_01948 0.34 -0.2 66,857 - H281DRAFT_01948 0.34 -0.7 66,860 + -1.3 66,860 + H281DRAFT_01948 0.34 +0.4 66,861 - H281DRAFT_01948 0.34 -1.3 66,862 + H281DRAFT_01948 0.34 +0.0 66,862 + H281DRAFT_01948 0.34 -0.3 66,863 - H281DRAFT_01948 0.34 +0.3 66,863 - H281DRAFT_01948 0.34 +0.4 66,868 + H281DRAFT_01948 0.34 -0.2 66,868 + H281DRAFT_01948 0.34 +1.2 66,868 + H281DRAFT_01948 0.34 -1.0 66,869 - H281DRAFT_01948 0.34 +0.3 66,869 - H281DRAFT_01948 0.34 +1.0 66,876 - H281DRAFT_01948 0.35 -0.4 66,953 + H281DRAFT_01948 0.39 -1.4 66,954 - H281DRAFT_01948 0.39 -2.3 67,115 + H281DRAFT_01948 0.48 -0.6 67,116 - H281DRAFT_01948 0.48 -0.5 67,116 - H281DRAFT_01948 0.48 +0.7 67,139 + H281DRAFT_01948 0.49 +0.2 67,139 + H281DRAFT_01948 0.49 +0.3 67,140 - H281DRAFT_01948 0.49 -0.5 67,140 - H281DRAFT_01948 0.49 -0.4 67,192 + H281DRAFT_01948 0.52 -0.8 67,193 - H281DRAFT_01948 0.52 +0.7 67,193 - H281DRAFT_01948 0.52 -0.3 67,193 - H281DRAFT_01948 0.52 +0.9 67,193 - H281DRAFT_01948 0.52 +0.9 67,200 - H281DRAFT_01948 0.53 -0.3 67,210 + H281DRAFT_01948 0.53 -0.2 67,478 + H281DRAFT_01948 0.68 -0.4 67,760 + H281DRAFT_01948 0.84 +0.3 67,760 + H281DRAFT_01948 0.84 +0.2 67,761 - H281DRAFT_01948 0.84 +0.0 67,761 - H281DRAFT_01948 0.84 -0.4 67,780 - H281DRAFT_01948 0.85 +0.1 67,781 + H281DRAFT_01948 0.85 -1.2 67,781 + H281DRAFT_01948 0.85 -1.6 67,879 - -0.4 67,879 - +0.1 67,966 - -0.3 68,035 + -0.3 68,036 - -0.2 68,036 - -0.4 68,050 - +0.1 68,079 + +0.7 68,079 + +0.4 68,079 + +0.7 68,079 + -0.6 68,079 + -0.4 68,079 + +0.4 68,080 - -0.9 68,080 - -0.1 68,080 - -0.2 68,080 - -0.1 68,106 + +0.2 68,106 + -0.2 68,106 + +0.2 68,107 - -0.3 68,107 - -0.3 68,107 - -1.1 68,110 + -0.8 68,111 - -0.3 68,111 - -0.2 68,123 + -0.7 68,124 - +0.1 68,136 - -0.5 68,216 - +0.4 68,285 + -1.0 68,285 + +0.4 68,285 + -1.0 68,286 - +0.9 68,286 - -0.3 68,328 + -0.6 68,328 + +1.0 68,329 - +0.1 68,331 + +0.4 68,351 + -0.4 68,351 + -0.8 68,351 + -0.4 68,352 - -0.2 68,352 - -0.4 68,353 + +1.0 68,354 - +0.4 68,403 + +0.2 68,403 + +0.2 68,403 + +0.1 68,403 + +0.5 68,404 - +4.0 68,404 - +0.2 68,404 - +0.7 68,404 - +0.2 68,404 - -0.6 68,404 - +1.0 68,404 - +0.1 68,404 - +0.4 68,404 - -0.4 68,474 + -0.4 68,475 - -0.2 68,574 - +0.2 68,574 - -0.2 68,597 + -2.4 68,597 + -3.4 68,598 - +0.1 68,598 - -0.1 68,598 - -0.1 68,598 - +0.1 68,601 + +1.8 68,601 + -0.1 68,602 - +0.4 68,602 - +0.3 68,602 - +0.7 68,602 - +0.3 68,602 - -0.9 68,602 - +0.8 68,602 - +0.4 68,697 + H281DRAFT_01949 0.14 -0.3 68,698 - H281DRAFT_01949 0.15 -0.2 68,698 - H281DRAFT_01949 0.15 +0.0 68,717 + H281DRAFT_01949 0.18 +2.0 68,718 - -0.6 68,718 - H281DRAFT_01949 0.18 -0.3 68,808 + H281DRAFT_01949 0.31 -0.0 68,808 + H281DRAFT_01949 0.31 +0.4 68,808 + H281DRAFT_01949 0.31 -2.1 68,808 + H281DRAFT_01949 0.31 +0.4 68,809 - H281DRAFT_01949 0.32 +0.9 68,809 - +2.0 68,857 + H281DRAFT_01949 0.39 -2.6 68,857 + H281DRAFT_01949 0.39 +0.7 68,857 + H281DRAFT_01949 0.39 -1.3 68,857 + H281DRAFT_01949 0.39 -0.7 68,858 - H281DRAFT_01949 0.39 +1.8 68,858 - H281DRAFT_01949 0.39 -0.1 68,858 - H281DRAFT_01949 0.39 +0.4 68,858 - H281DRAFT_01949 0.39 -0.2 68,858 - H281DRAFT_01949 0.39 -0.3 68,858 - H281DRAFT_01949 0.39 +0.2 68,858 - H281DRAFT_01949 0.39 +0.0 68,868 + H281DRAFT_01949 0.40 -0.7 68,869 - H281DRAFT_01949 0.41 -0.0 68,887 + H281DRAFT_01949 0.43 +0.5 68,897 + H281DRAFT_01949 0.45 -0.3 69,022 - H281DRAFT_01949 0.64 +0.9 69,022 - H281DRAFT_01949 0.64 -0.1
Or see this region's nucleotide sequence