Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01916

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01915 and H281DRAFT_01916 are separated by 384 nucleotidesH281DRAFT_01916 and H281DRAFT_01917 are separated by 76 nucleotides H281DRAFT_01915: H281DRAFT_01915 - iron complex outermembrane recepter protein, at 31,108 to 33,231 _01915 H281DRAFT_01916: H281DRAFT_01916 - Uncharacterized iron-regulated membrane protein, at 33,616 to 34,881 _01916 H281DRAFT_01917: H281DRAFT_01917 - formyltetrahydrofolate deformylase, at 34,958 to 35,827 _01917 Position (kb) 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 32.650 kb on + strand, within H281DRAFT_01915at 32.650 kb on + strand, within H281DRAFT_01915at 32.650 kb on + strand, within H281DRAFT_01915at 32.650 kb on + strand, within H281DRAFT_01915at 32.663 kb on + strand, within H281DRAFT_01915at 32.663 kb on + strand, within H281DRAFT_01915at 32.664 kb on - strand, within H281DRAFT_01915at 32.664 kb on - strand, within H281DRAFT_01915at 32.664 kb on - strand, within H281DRAFT_01915at 32.666 kb on + strand, within H281DRAFT_01915at 32.687 kb on - strand, within H281DRAFT_01915at 32.723 kb on + strand, within H281DRAFT_01915at 32.724 kb on - strand, within H281DRAFT_01915at 32.757 kb on - strand, within H281DRAFT_01915at 32.757 kb on - strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.826 kb on - strand, within H281DRAFT_01915at 32.826 kb on - strand, within H281DRAFT_01915at 32.897 kb on + strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.915 kb on + strand, within H281DRAFT_01915at 33.324 kb on + strandat 33.342 kb on + strandat 33.425 kb on + strandat 33.516 kb on + strandat 33.835 kb on + strand, within H281DRAFT_01916at 33.835 kb on + strand, within H281DRAFT_01916at 33.835 kb on + strand, within H281DRAFT_01916at 33.836 kb on - strand, within H281DRAFT_01916at 33.836 kb on - strand, within H281DRAFT_01916at 33.836 kb on - strand, within H281DRAFT_01916at 33.836 kb on - strand, within H281DRAFT_01916at 33.864 kb on + strand, within H281DRAFT_01916at 33.916 kb on + strand, within H281DRAFT_01916at 33.916 kb on + strand, within H281DRAFT_01916at 34.027 kb on + strand, within H281DRAFT_01916at 34.027 kb on + strand, within H281DRAFT_01916at 34.027 kb on + strand, within H281DRAFT_01916at 34.028 kb on - strand, within H281DRAFT_01916at 34.039 kb on + strand, within H281DRAFT_01916at 34.040 kb on - strand, within H281DRAFT_01916at 34.040 kb on - strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.162 kb on - strand, within H281DRAFT_01916at 34.162 kb on - strand, within H281DRAFT_01916at 34.204 kb on + strand, within H281DRAFT_01916at 34.480 kb on + strand, within H281DRAFT_01916at 34.480 kb on + strand, within H281DRAFT_01916at 34.480 kb on + strand, within H281DRAFT_01916at 34.480 kb on + strand, within H281DRAFT_01916at 34.481 kb on - strand, within H281DRAFT_01916at 34.481 kb on - strand, within H281DRAFT_01916at 34.483 kb on + strand, within H281DRAFT_01916at 34.505 kb on - strand, within H281DRAFT_01916at 34.520 kb on - strand, within H281DRAFT_01916at 34.570 kb on + strand, within H281DRAFT_01916at 34.571 kb on - strand, within H281DRAFT_01916at 34.923 kb on + strandat 35.148 kb on + strandat 35.806 kb on + strandat 35.876 kb on + strandat 35.876 kb on + strandat 35.876 kb on + strandat 35.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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32,650 + H281DRAFT_01915 0.73 +0.4
32,650 + H281DRAFT_01915 0.73 -1.3
32,650 + H281DRAFT_01915 0.73 -0.6
32,650 + H281DRAFT_01915 0.73 +0.2
32,663 + H281DRAFT_01915 0.73 -0.1
32,663 + H281DRAFT_01915 0.73 +0.6
32,664 - H281DRAFT_01915 0.73 -0.0
32,664 - H281DRAFT_01915 0.73 -0.7
32,664 - H281DRAFT_01915 0.73 +0.1
32,666 + H281DRAFT_01915 0.73 +1.0
32,687 - H281DRAFT_01915 0.74 +0.8
32,723 + H281DRAFT_01915 0.76 +0.8
32,724 - H281DRAFT_01915 0.76 +0.1
32,757 - H281DRAFT_01915 0.78 +0.5
32,757 - H281DRAFT_01915 0.78 -1.5
32,825 + H281DRAFT_01915 0.81 +0.4
32,825 + H281DRAFT_01915 0.81 +0.3
32,825 + H281DRAFT_01915 0.81 -1.1
32,825 + H281DRAFT_01915 0.81 +0.1
32,825 + H281DRAFT_01915 0.81 +0.0
32,825 + H281DRAFT_01915 0.81 +0.7
32,826 - H281DRAFT_01915 0.81 -2.0
32,826 - H281DRAFT_01915 0.81 +0.2
32,897 + H281DRAFT_01915 0.84 +2.7
32,898 - H281DRAFT_01915 0.84 +0.3
32,898 - H281DRAFT_01915 0.84 +1.1
32,898 - H281DRAFT_01915 0.84 +0.1
32,898 - H281DRAFT_01915 0.84 -1.1
32,898 - H281DRAFT_01915 0.84 +0.5
32,898 - H281DRAFT_01915 0.84 -0.6
32,915 + H281DRAFT_01915 0.85 -0.3
33,324 + +0.3
33,342 + -0.5
33,425 + -0.4
33,516 + -0.1
33,835 + H281DRAFT_01916 0.17 +0.3
33,835 + H281DRAFT_01916 0.17 -0.9
33,835 + H281DRAFT_01916 0.17 -1.6
33,836 - H281DRAFT_01916 0.17 -0.9
33,836 - H281DRAFT_01916 0.17 +0.4
33,836 - H281DRAFT_01916 0.17 -0.9
33,836 - H281DRAFT_01916 0.17 -1.0
33,864 + H281DRAFT_01916 0.20 +0.0
33,916 + H281DRAFT_01916 0.24 -2.2
33,916 + H281DRAFT_01916 0.24 +0.4
34,027 + H281DRAFT_01916 0.32 -0.3
34,027 + H281DRAFT_01916 0.32 +0.5
34,027 + H281DRAFT_01916 0.32 -0.2
34,028 - H281DRAFT_01916 0.33 +0.4
34,039 + H281DRAFT_01916 0.33 -0.7
34,040 - H281DRAFT_01916 0.33 -0.3
34,040 - H281DRAFT_01916 0.33 -0.4
34,161 + H281DRAFT_01916 0.43 -2.0
34,161 + H281DRAFT_01916 0.43 +0.0
34,161 + H281DRAFT_01916 0.43 -2.8
34,161 + H281DRAFT_01916 0.43 +2.0
34,162 - H281DRAFT_01916 0.43 +0.3
34,162 - H281DRAFT_01916 0.43 +1.3
34,204 + H281DRAFT_01916 0.46 +0.1
34,480 + H281DRAFT_01916 0.68 -0.1
34,480 + H281DRAFT_01916 0.68 -0.2
34,480 + H281DRAFT_01916 0.68 -0.9
34,480 + H281DRAFT_01916 0.68 -0.4
34,481 - H281DRAFT_01916 0.68 -0.4
34,481 - H281DRAFT_01916 0.68 +0.6
34,483 + H281DRAFT_01916 0.68 +1.0
34,505 - H281DRAFT_01916 0.70 +1.2
34,520 - H281DRAFT_01916 0.71 +0.3
34,570 + H281DRAFT_01916 0.75 +0.3
34,571 - H281DRAFT_01916 0.75 +0.3
34,923 + -1.0
35,148 + -1.0
35,806 + -1.8
35,876 + +0.8
35,876 + +2.7
35,876 + -2.2
35,877 - +0.1

Or see this region's nucleotide sequence