Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01881 and H281DRAFT_01882 are separated by 956 nucleotides H281DRAFT_01882 and H281DRAFT_01883 are separated by 814 nucleotides
H281DRAFT_01881: H281DRAFT_01881 - two-component system, LuxR family, sensor kinase FixL, at 797,874 to 799,334
_01881
H281DRAFT_01882: H281DRAFT_01882 - Lipid-binding SYLF domain-containing protein, at 800,291 to 800,878
_01882
H281DRAFT_01883: H281DRAFT_01883 - putative addiction module antidote protein, CC2985 family, at 801,693 to 801,926
_01883
Position (kb) 800
801 Strain fitness (log2 ratio) -2
-1
0
1
2 at 799.329 kb on - strand at 799.475 kb on + strand at 799.476 kb on - strand at 799.479 kb on - strand at 799.528 kb on - strand at 799.528 kb on - strand at 799.538 kb on - strand at 799.933 kb on + strand at 800.266 kb on - strand at 800.373 kb on - strand at 800.373 kb on - strand, within H281DRAFT_01882 at 800.568 kb on + strand, within H281DRAFT_01882 at 800.569 kb on - strand, within H281DRAFT_01882 at 800.569 kb on - strand, within H281DRAFT_01882 at 801.022 kb on - strand at 801.450 kb on - strand at 801.466 kb on + strand at 801.466 kb on + strand at 801.654 kb on + strand at 801.655 kb on - strand at 801.655 kb on - strand at 801.766 kb on + strand, within H281DRAFT_01883
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 799,329 - -0.8 799,475 + -0.6 799,476 - -0.4 799,479 - -0.1 799,528 - +0.3 799,528 - +2.1 799,538 - -2.6 799,933 + -0.2 800,266 - +0.1 800,373 - +1.0 800,373 - H281DRAFT_01882 0.14 -0.5 800,568 + H281DRAFT_01882 0.47 -0.2 800,569 - H281DRAFT_01882 0.47 -0.3 800,569 - H281DRAFT_01882 0.47 +0.3 801,022 - +0.9 801,450 - -0.5 801,466 + -0.1 801,466 + +1.2 801,654 + +1.3 801,655 - +0.4 801,655 - -1.0 801,766 + H281DRAFT_01883 0.31 -1.2
Or see this region's nucleotide sequence