Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01451 and H281DRAFT_01452 are separated by 4 nucleotides H281DRAFT_01452 and H281DRAFT_01453 overlap by 1 nucleotides H281DRAFT_01453 and H281DRAFT_01454 are separated by 7 nucleotides
H281DRAFT_01451: H281DRAFT_01451 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 314,679 to 315,926
_01451
H281DRAFT_01452: H281DRAFT_01452 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 315,931 to 316,848
_01452
H281DRAFT_01453: H281DRAFT_01453 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 316,848 to 317,807
_01453
H281DRAFT_01454: H281DRAFT_01454 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 317,815 to 319,053
_01454
Position (kb) 315
316
317 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 315.131 kb on - strand, within H281DRAFT_01451 at 315.229 kb on + strand at 315.230 kb on - strand, within H281DRAFT_01451 at 315.544 kb on + strand, within H281DRAFT_01451 at 315.556 kb on - strand, within H281DRAFT_01451 at 315.919 kb on + strand at 315.989 kb on + strand at 316.044 kb on - strand, within H281DRAFT_01452 at 316.197 kb on + strand at 316.286 kb on + strand, within H281DRAFT_01452 at 316.513 kb on - strand, within H281DRAFT_01452 at 316.624 kb on + strand, within H281DRAFT_01452 at 316.697 kb on - strand, within H281DRAFT_01452 at 316.752 kb on - strand, within H281DRAFT_01452 at 316.975 kb on + strand, within H281DRAFT_01453 at 316.975 kb on + strand, within H281DRAFT_01453 at 316.976 kb on - strand, within H281DRAFT_01453 at 317.131 kb on + strand, within H281DRAFT_01453 at 317.569 kb on + strand, within H281DRAFT_01453 at 317.570 kb on - strand, within H281DRAFT_01453 at 317.570 kb on - strand, within H281DRAFT_01453
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 315,131 - H281DRAFT_01451 0.36 -0.3 315,229 + +4.0 315,230 - H281DRAFT_01451 0.44 +1.1 315,544 + H281DRAFT_01451 0.69 +0.1 315,556 - H281DRAFT_01451 0.70 +0.4 315,919 + -1.1 315,989 + -0.4 316,044 - H281DRAFT_01452 0.12 +0.1 316,197 + -1.1 316,286 + H281DRAFT_01452 0.39 +0.7 316,513 - H281DRAFT_01452 0.63 +0.0 316,624 + H281DRAFT_01452 0.75 +0.0 316,697 - H281DRAFT_01452 0.83 +0.7 316,752 - H281DRAFT_01452 0.89 +1.9 316,975 + H281DRAFT_01453 0.13 -1.6 316,975 + H281DRAFT_01453 0.13 -0.0 316,976 - H281DRAFT_01453 0.13 +0.5 317,131 + H281DRAFT_01453 0.29 -0.2 317,569 + H281DRAFT_01453 0.75 -1.2 317,570 - H281DRAFT_01453 0.75 -1.1 317,570 - H281DRAFT_01453 0.75 -0.5
Or see this region's nucleotide sequence