Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01394 and H281DRAFT_01395 are separated by 19 nucleotides H281DRAFT_01395 and H281DRAFT_01396 are separated by 134 nucleotides H281DRAFT_01396 and H281DRAFT_01397 are separated by 522 nucleotides
H281DRAFT_01394: H281DRAFT_01394 - RND family efflux transporter, MFP subunit, at 249,404 to 250,612
_01394
H281DRAFT_01395: H281DRAFT_01395 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 250,632 to 252,203
_01395
H281DRAFT_01396: H281DRAFT_01396 - hypothetical protein, at 252,338 to 252,628
_01396
H281DRAFT_01397: H281DRAFT_01397 - hypothetical protein, at 253,151 to 253,396
_01397
Position (kb) 250
251
252
253 Strain fitness (log2 ratio) -2
-1
0
1 at 250.007 kb on + strand, within H281DRAFT_01394 at 250.008 kb on - strand, within H281DRAFT_01394 at 250.191 kb on + strand, within H281DRAFT_01394 at 250.232 kb on + strand, within H281DRAFT_01394 at 251.645 kb on + strand, within H281DRAFT_01395 at 251.646 kb on - strand, within H281DRAFT_01395 at 251.647 kb on + strand, within H281DRAFT_01395 at 251.648 kb on - strand, within H281DRAFT_01395 at 251.648 kb on - strand, within H281DRAFT_01395 at 251.927 kb on + strand, within H281DRAFT_01395 at 252.196 kb on - strand at 252.339 kb on + strand at 252.367 kb on - strand, within H281DRAFT_01396 at 252.367 kb on - strand, within H281DRAFT_01396 at 252.490 kb on + strand, within H281DRAFT_01396 at 252.491 kb on - strand, within H281DRAFT_01396 at 252.667 kb on + strand at 252.736 kb on - strand at 252.745 kb on - strand at 252.857 kb on - strand at 252.954 kb on - strand at 253.082 kb on + strand at 253.082 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 250,007 + H281DRAFT_01394 0.50 +0.7 250,008 - H281DRAFT_01394 0.50 +1.2 250,191 + H281DRAFT_01394 0.65 +0.9 250,232 + H281DRAFT_01394 0.68 +0.1 251,645 + H281DRAFT_01395 0.64 +1.6 251,646 - H281DRAFT_01395 0.65 -1.1 251,647 + H281DRAFT_01395 0.65 -0.5 251,648 - H281DRAFT_01395 0.65 -0.1 251,648 - H281DRAFT_01395 0.65 -1.9 251,927 + H281DRAFT_01395 0.82 -0.0 252,196 - +0.7 252,339 + -0.1 252,367 - H281DRAFT_01396 0.10 +1.4 252,367 - H281DRAFT_01396 0.10 +0.2 252,490 + H281DRAFT_01396 0.52 -0.1 252,491 - H281DRAFT_01396 0.53 -1.9 252,667 + +0.8 252,736 - +0.1 252,745 - -1.7 252,857 - +0.4 252,954 - -1.1 253,082 + +1.2 253,082 + +0.1
Or see this region's nucleotide sequence