Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01066 and H281DRAFT_01067 are separated by 4 nucleotides H281DRAFT_01067 and H281DRAFT_01068 overlap by 4 nucleotides H281DRAFT_01068 and H281DRAFT_01069 are separated by 10 nucleotides
H281DRAFT_01066: H281DRAFT_01066 - Phenylpropionate dioxygenase, large terminal subunit, at 1,197,574 to 1,198,611
_01066
H281DRAFT_01067: H281DRAFT_01067 - NitT/TauT family transport system ATP-binding protein, at 1,198,616 to 1,199,440
_01067
H281DRAFT_01068: H281DRAFT_01068 - NitT/TauT family transport system permease protein, at 1,199,437 to 1,200,285
_01068
H281DRAFT_01069: H281DRAFT_01069 - Cytosine/adenosine deaminase, at 1,200,296 to 1,201,720
_01069
Position (kb) 1198
1199
1200 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1198.003 kb on + strand, within H281DRAFT_01066 at 1198.466 kb on - strand, within H281DRAFT_01066 at 1199.232 kb on - strand, within H281DRAFT_01067 at 1199.558 kb on + strand, within H281DRAFT_01068 at 1199.911 kb on - strand, within H281DRAFT_01068
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 1,198,003 + H281DRAFT_01066 0.41 +0.5 1,198,466 - H281DRAFT_01066 0.86 +0.1 1,199,232 - H281DRAFT_01067 0.75 -1.0 1,199,558 + H281DRAFT_01068 0.14 +2.0 1,199,911 - H281DRAFT_01068 0.56 -1.9
Or see this region's nucleotide sequence