Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00895 and H281DRAFT_00896 are separated by 157 nucleotides H281DRAFT_00896 and H281DRAFT_00897 are separated by 179 nucleotides
H281DRAFT_00895: H281DRAFT_00895 - trigger factor, at 991,500 to 992,846
_00895
H281DRAFT_00896: H281DRAFT_00896 - ATP-dependent Clp protease proteolytic subunit ClpP, at 993,004 to 993,657
_00896
H281DRAFT_00897: H281DRAFT_00897 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 993,837 to 995,108
_00897
Position (kb) 993
994 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 992.059 kb on + strand, within H281DRAFT_00895 at 992.139 kb on - strand, within H281DRAFT_00895 at 992.552 kb on + strand, within H281DRAFT_00895 at 992.673 kb on + strand, within H281DRAFT_00895 at 992.703 kb on + strand, within H281DRAFT_00895 at 992.706 kb on + strand, within H281DRAFT_00895 at 992.742 kb on + strand at 992.844 kb on + strand at 992.936 kb on + strand at 992.961 kb on + strand at 993.133 kb on + strand, within H281DRAFT_00896 at 993.253 kb on + strand, within H281DRAFT_00896 at 993.253 kb on + strand, within H281DRAFT_00896 at 993.713 kb on + strand at 993.713 kb on + strand at 993.717 kb on + strand at 993.717 kb on + strand at 993.808 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 992,059 + H281DRAFT_00895 0.41 -3.9 992,139 - H281DRAFT_00895 0.47 +2.9 992,552 + H281DRAFT_00895 0.78 -1.5 992,673 + H281DRAFT_00895 0.87 -0.8 992,703 + H281DRAFT_00895 0.89 +0.3 992,706 + H281DRAFT_00895 0.90 +0.5 992,742 + -2.2 992,844 + -4.1 992,936 + -0.8 992,961 + +0.4 993,133 + H281DRAFT_00896 0.20 -3.7 993,253 + H281DRAFT_00896 0.38 -2.4 993,253 + H281DRAFT_00896 0.38 -0.9 993,713 + -2.0 993,713 + +1.5 993,717 + +0.3 993,717 + -0.2 993,808 + -0.6
Or see this region's nucleotide sequence