Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00839 and H281DRAFT_00840 are separated by 209 nucleotides H281DRAFT_00840 and H281DRAFT_00841 overlap by 86 nucleotides H281DRAFT_00841 and H281DRAFT_00842 are separated by 31 nucleotides H281DRAFT_00842 and H281DRAFT_00843 are separated by 5 nucleotides
H281DRAFT_00839: H281DRAFT_00839 - NADPH2:quinone reductase, at 929,027 to 930,001
_00839
H281DRAFT_00840: H281DRAFT_00840 - 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase, at 930,211 to 930,969
_00840
H281DRAFT_00841: H281DRAFT_00841 - hypothetical protein, at 930,884 to 931,456
_00841
H281DRAFT_00842: H281DRAFT_00842 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 931,488 to 932,102
_00842
H281DRAFT_00843: H281DRAFT_00843 - lipoprotein NlpD, at 932,108 to 933,055
_00843
Position (kb) 930
931
932 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 929.952 kb on - strand at 929.952 kb on - strand at 929.977 kb on - strand at 930.043 kb on - strand at 930.061 kb on + strand at 930.062 kb on - strand at 930.067 kb on + strand at 930.068 kb on - strand at 930.068 kb on - strand at 930.200 kb on - strand at 930.221 kb on + strand at 930.222 kb on - strand at 930.242 kb on - strand at 930.242 kb on - strand at 930.269 kb on - strand at 930.392 kb on - strand, within H281DRAFT_00840 at 930.392 kb on - strand, within H281DRAFT_00840 at 930.394 kb on + strand, within H281DRAFT_00840 at 930.395 kb on - strand, within H281DRAFT_00840 at 930.514 kb on + strand, within H281DRAFT_00840 at 930.514 kb on + strand, within H281DRAFT_00840 at 930.514 kb on - strand, within H281DRAFT_00840 at 930.515 kb on - strand at 930.646 kb on + strand, within H281DRAFT_00840 at 930.729 kb on + strand, within H281DRAFT_00840 at 930.730 kb on - strand, within H281DRAFT_00840 at 930.780 kb on + strand, within H281DRAFT_00840 at 930.803 kb on - strand, within H281DRAFT_00840 at 930.803 kb on - strand, within H281DRAFT_00840 at 930.838 kb on - strand, within H281DRAFT_00840 at 931.054 kb on + strand, within H281DRAFT_00841 at 931.054 kb on + strand, within H281DRAFT_00841 at 931.634 kb on + strand, within H281DRAFT_00842 at 931.634 kb on + strand, within H281DRAFT_00842 at 931.767 kb on + strand, within H281DRAFT_00842 at 931.768 kb on - strand, within H281DRAFT_00842 at 931.768 kb on - strand, within H281DRAFT_00842 at 931.851 kb on + strand at 931.852 kb on - strand, within H281DRAFT_00842 at 931.939 kb on + strand, within H281DRAFT_00842 at 931.940 kb on - strand, within H281DRAFT_00842 at 931.940 kb on - strand, within H281DRAFT_00842 at 932.008 kb on + strand, within H281DRAFT_00842 at 932.113 kb on + strand at 932.113 kb on + strand at 932.113 kb on + strand at 932.114 kb on - strand at 932.153 kb on - strand at 932.153 kb on - strand at 932.153 kb on - strand at 932.153 kb on - strand at 932.322 kb on - strand, within H281DRAFT_00843 at 932.381 kb on + strand, within H281DRAFT_00843 at 932.381 kb on + strand, within H281DRAFT_00843
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 929,952 - -0.8 929,952 - -0.7 929,977 - +0.6 930,043 - -0.5 930,061 + -1.7 930,062 - +0.8 930,067 + +0.4 930,068 - +1.1 930,068 - -0.5 930,200 - -0.2 930,221 + -0.8 930,222 - +1.7 930,242 - -0.8 930,242 - -2.1 930,269 - -0.3 930,392 - H281DRAFT_00840 0.24 -0.8 930,392 - H281DRAFT_00840 0.24 -2.2 930,394 + H281DRAFT_00840 0.24 -0.4 930,395 - H281DRAFT_00840 0.24 -1.4 930,514 + H281DRAFT_00840 0.40 -0.3 930,514 + H281DRAFT_00840 0.40 -1.1 930,514 - H281DRAFT_00840 0.40 -0.8 930,515 - +2.8 930,646 + H281DRAFT_00840 0.57 +0.4 930,729 + H281DRAFT_00840 0.68 -1.9 930,730 - H281DRAFT_00840 0.68 -1.1 930,780 + H281DRAFT_00840 0.75 -1.3 930,803 - H281DRAFT_00840 0.78 +0.2 930,803 - H281DRAFT_00840 0.78 -3.2 930,838 - H281DRAFT_00840 0.83 -1.0 931,054 + H281DRAFT_00841 0.30 -0.9 931,054 + H281DRAFT_00841 0.30 -0.9 931,634 + H281DRAFT_00842 0.24 -0.7 931,634 + H281DRAFT_00842 0.24 -0.7 931,767 + H281DRAFT_00842 0.45 -4.2 931,768 - H281DRAFT_00842 0.46 -0.9 931,768 - H281DRAFT_00842 0.46 +1.1 931,851 + +0.5 931,852 - H281DRAFT_00842 0.59 -3.7 931,939 + H281DRAFT_00842 0.73 -2.5 931,940 - H281DRAFT_00842 0.73 -3.3 931,940 - H281DRAFT_00842 0.73 -1.4 932,008 + H281DRAFT_00842 0.85 -2.1 932,113 + -2.5 932,113 + +0.4 932,113 + +1.1 932,114 - -0.8 932,153 - +0.8 932,153 - +0.4 932,153 - -0.8 932,153 - -0.5 932,322 - H281DRAFT_00843 0.23 +0.3 932,381 + H281DRAFT_00843 0.29 +0.2 932,381 + H281DRAFT_00843 0.29 +0.6
Or see this region's nucleotide sequence