Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00662 and H281DRAFT_00663 are separated by 643 nucleotides H281DRAFT_00663 and H281DRAFT_00664 overlap by 4 nucleotides H281DRAFT_00664 and H281DRAFT_00665 are separated by 13 nucleotides
H281DRAFT_00662: H281DRAFT_00662 - Short-chain dehydrogenase, at 741,334 to 742,167
_00662
H281DRAFT_00663: H281DRAFT_00663 - assimilatory nitrite reductase (NAD(P)H) small subunit (EC 1.7.1.4), at 742,811 to 743,158
_00663
H281DRAFT_00664: H281DRAFT_00664 - assimilatory nitrate reductase (NADH) beta subunit (EC 1.7.1.1), at 743,155 to 744,426
_00664
H281DRAFT_00665: H281DRAFT_00665 - assimilatory nitrate reductase (NADH) alpha subunit apoprotein (EC 1.7.1.1), at 744,440 to 747,280
_00665
Position (kb) 743
744
745 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 742.206 kb on - strand at 742.669 kb on + strand at 742.786 kb on + strand at 742.786 kb on + strand at 742.787 kb on - strand at 742.787 kb on - strand at 742.787 kb on - strand at 742.791 kb on - strand at 742.791 kb on - strand at 742.877 kb on - strand, within H281DRAFT_00663 at 742.911 kb on + strand, within H281DRAFT_00663 at 742.918 kb on - strand, within H281DRAFT_00663 at 743.192 kb on + strand at 744.022 kb on + strand, within H281DRAFT_00664 at 744.022 kb on + strand, within H281DRAFT_00664 at 744.262 kb on - strand, within H281DRAFT_00664 at 744.458 kb on - strand at 744.822 kb on - strand, within H281DRAFT_00665 at 744.950 kb on + strand, within H281DRAFT_00665 at 745.195 kb on - strand, within H281DRAFT_00665 at 745.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 742,206 - -0.6 742,669 + -1.1 742,786 + -0.3 742,786 + +0.1 742,787 - -0.5 742,787 - -1.6 742,787 - -1.5 742,791 - -1.6 742,791 - -1.7 742,877 - H281DRAFT_00663 0.19 +0.2 742,911 + H281DRAFT_00663 0.29 -0.1 742,918 - H281DRAFT_00663 0.31 -0.1 743,192 + -1.9 744,022 + H281DRAFT_00664 0.68 -0.6 744,022 + H281DRAFT_00664 0.68 -0.9 744,262 - H281DRAFT_00664 0.87 -0.7 744,458 - -3.9 744,822 - H281DRAFT_00665 0.13 -2.0 744,950 + H281DRAFT_00665 0.18 -1.2 745,195 - H281DRAFT_00665 0.27 -1.6 745,267 - +0.9
Or see this region's nucleotide sequence