Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00652 and H281DRAFT_00653 are separated by 856 nucleotides H281DRAFT_00653 and H281DRAFT_00654 are separated by 98 nucleotides
H281DRAFT_00652: H281DRAFT_00652 - Glycosyltransferase involved in cell wall bisynthesis, at 729,819 to 730,586
_00652
H281DRAFT_00653: H281DRAFT_00653 - Enoyl-CoA hydratase/carnithine racemase, at 731,443 to 732,204
_00653
H281DRAFT_00654: H281DRAFT_00654 - putative spermidine/putrescine transport system substrate-binding protein, at 732,303 to 733,364
_00654
Position (kb) 731
732
733 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 730.567 kb on + strand at 730.600 kb on + strand at 730.603 kb on + strand at 730.777 kb on + strand at 730.805 kb on + strand at 730.806 kb on - strand at 730.899 kb on + strand at 730.899 kb on + strand at 730.900 kb on - strand at 730.900 kb on - strand at 730.900 kb on - strand at 731.814 kb on + strand, within H281DRAFT_00653 at 731.814 kb on + strand, within H281DRAFT_00653 at 731.814 kb on + strand, within H281DRAFT_00653 at 731.815 kb on - strand, within H281DRAFT_00653 at 731.919 kb on + strand, within H281DRAFT_00653 at 732.189 kb on + strand at 732.562 kb on - strand, within H281DRAFT_00654 at 732.562 kb on - strand, within H281DRAFT_00654
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 730,567 + +0.1 730,600 + -1.4 730,603 + -1.3 730,777 + +0.1 730,805 + -0.4 730,806 - -0.9 730,899 + +0.6 730,899 + +0.3 730,900 - +0.0 730,900 - +2.1 730,900 - +0.5 731,814 + H281DRAFT_00653 0.49 -0.7 731,814 + H281DRAFT_00653 0.49 -3.0 731,814 + H281DRAFT_00653 0.49 -2.9 731,815 - H281DRAFT_00653 0.49 +1.8 731,919 + H281DRAFT_00653 0.62 -3.1 732,189 + -3.2 732,562 - H281DRAFT_00654 0.24 +1.1 732,562 - H281DRAFT_00654 0.24 +0.6
Or see this region's nucleotide sequence