Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00607 and H281DRAFT_00608 are separated by 120 nucleotides H281DRAFT_00608 and H281DRAFT_00609 are separated by 30 nucleotides
H281DRAFT_00607: H281DRAFT_00607 - hypothetical protein, at 680,291 to 681,580
_00607
H281DRAFT_00608: H281DRAFT_00608 - UTP--GlnB (protein PII) uridylyltransferase, GlnD, at 681,701 to 684,280
_00608
H281DRAFT_00609: H281DRAFT_00609 - methionine aminopeptidase, type I, at 684,311 to 685,120
_00609
Position (kb) 681
682
683
684
685 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 680.861 kb on - strand, within H281DRAFT_00607 at 681.611 kb on - strand at 681.611 kb on - strand at 681.871 kb on - strand at 681.871 kb on - strand at 681.912 kb on + strand at 681.915 kb on + strand at 682.074 kb on + strand, within H281DRAFT_00608 at 682.075 kb on - strand, within H281DRAFT_00608 at 682.111 kb on + strand, within H281DRAFT_00608 at 682.225 kb on - strand, within H281DRAFT_00608 at 682.354 kb on - strand, within H281DRAFT_00608 at 682.546 kb on + strand, within H281DRAFT_00608 at 682.546 kb on + strand, within H281DRAFT_00608 at 682.547 kb on - strand, within H281DRAFT_00608 at 682.547 kb on - strand, within H281DRAFT_00608 at 682.547 kb on - strand at 682.584 kb on + strand, within H281DRAFT_00608 at 682.584 kb on + strand, within H281DRAFT_00608 at 682.584 kb on + strand, within H281DRAFT_00608 at 682.585 kb on - strand, within H281DRAFT_00608 at 682.585 kb on - strand, within H281DRAFT_00608 at 682.585 kb on - strand, within H281DRAFT_00608 at 682.585 kb on - strand, within H281DRAFT_00608 at 682.833 kb on + strand, within H281DRAFT_00608 at 682.833 kb on + strand, within H281DRAFT_00608 at 682.968 kb on + strand, within H281DRAFT_00608 at 682.969 kb on - strand, within H281DRAFT_00608 at 683.155 kb on - strand, within H281DRAFT_00608 at 683.317 kb on + strand, within H281DRAFT_00608 at 684.274 kb on + strand at 684.274 kb on + strand at 684.275 kb on - strand at 684.368 kb on + strand at 684.368 kb on + strand at 684.368 kb on + strand at 684.369 kb on - strand at 684.369 kb on - strand at 684.607 kb on - strand, within H281DRAFT_00609 at 684.624 kb on + strand, within H281DRAFT_00609 at 684.624 kb on + strand, within H281DRAFT_00609 at 684.785 kb on - strand, within H281DRAFT_00609 at 684.785 kb on - strand, within H281DRAFT_00609 at 684.785 kb on - strand, within H281DRAFT_00609 at 684.796 kb on - strand, within H281DRAFT_00609 at 684.796 kb on - strand, within H281DRAFT_00609 at 684.937 kb on - strand, within H281DRAFT_00609 at 684.979 kb on - strand at 684.979 kb on - strand, within H281DRAFT_00609 at 684.979 kb on - strand, within H281DRAFT_00609 at 685.042 kb on - strand at 685.042 kb on - strand at 685.042 kb on - strand at 685.114 kb on + strand at 685.233 kb on + strand at 685.233 kb on + strand at 685.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 680,861 - H281DRAFT_00607 0.44 +1.4 681,611 - +0.5 681,611 - -0.9 681,871 - -3.5 681,871 - -2.2 681,912 + -4.0 681,915 + -2.4 682,074 + H281DRAFT_00608 0.14 -1.0 682,075 - H281DRAFT_00608 0.14 -2.0 682,111 + H281DRAFT_00608 0.16 +0.3 682,225 - H281DRAFT_00608 0.20 -3.0 682,354 - H281DRAFT_00608 0.25 -2.4 682,546 + H281DRAFT_00608 0.33 -2.9 682,546 + H281DRAFT_00608 0.33 -4.2 682,547 - H281DRAFT_00608 0.33 -2.0 682,547 - H281DRAFT_00608 0.33 -5.3 682,547 - +0.6 682,584 + H281DRAFT_00608 0.34 -1.8 682,584 + H281DRAFT_00608 0.34 -2.1 682,584 + H281DRAFT_00608 0.34 -5.0 682,585 - H281DRAFT_00608 0.34 -0.4 682,585 - H281DRAFT_00608 0.34 -3.1 682,585 - H281DRAFT_00608 0.34 -3.6 682,585 - H281DRAFT_00608 0.34 -3.4 682,833 + H281DRAFT_00608 0.44 +0.6 682,833 + H281DRAFT_00608 0.44 -3.0 682,968 + H281DRAFT_00608 0.49 -3.1 682,969 - H281DRAFT_00608 0.49 -3.2 683,155 - H281DRAFT_00608 0.56 -1.8 683,317 + H281DRAFT_00608 0.63 -4.6 684,274 + -2.8 684,274 + -2.8 684,275 - -1.7 684,368 + +0.3 684,368 + -2.1 684,368 + -2.5 684,369 - -1.0 684,369 - +0.7 684,607 - H281DRAFT_00609 0.37 +1.6 684,624 + H281DRAFT_00609 0.39 -2.0 684,624 + H281DRAFT_00609 0.39 -4.9 684,785 - H281DRAFT_00609 0.59 -1.1 684,785 - H281DRAFT_00609 0.59 +1.1 684,785 - H281DRAFT_00609 0.59 +1.6 684,796 - H281DRAFT_00609 0.60 -0.0 684,796 - H281DRAFT_00609 0.60 +0.5 684,937 - H281DRAFT_00609 0.77 -0.3 684,979 - +2.6 684,979 - H281DRAFT_00609 0.82 -0.6 684,979 - H281DRAFT_00609 0.82 +0.3 685,042 - -0.1 685,042 - +2.1 685,042 - -0.4 685,114 + -1.8 685,233 + -1.3 685,233 + -0.7 685,234 - -3.5
Or see this region's nucleotide sequence