Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00415 and H281DRAFT_00416 overlap by 4 nucleotides H281DRAFT_00416 and H281DRAFT_00417 are separated by 49 nucleotides H281DRAFT_00417 and H281DRAFT_00418 overlap by 4 nucleotides
H281DRAFT_00415: H281DRAFT_00415 - putative spermidine/putrescine transport system ATP-binding protein, at 456,268 to 457,356
_00415
H281DRAFT_00416: H281DRAFT_00416 - putative spermidine/putrescine transport system permease protein, at 457,353 to 458,258
_00416
H281DRAFT_00417: H281DRAFT_00417 - putative spermidine/putrescine transport system permease protein, at 458,308 to 459,132
_00417
H281DRAFT_00418: H281DRAFT_00418 - putative spermidine/putrescine transport system substrate-binding protein, at 459,129 to 460,208
_00418
Position (kb) 457
458
459 Strain fitness (log2 ratio) -1
0
1
2 at 456.647 kb on + strand, within H281DRAFT_00415 at 456.647 kb on + strand, within H281DRAFT_00415 at 456.747 kb on - strand, within H281DRAFT_00415 at 456.999 kb on + strand, within H281DRAFT_00415 at 457.000 kb on - strand, within H281DRAFT_00415 at 457.342 kb on - strand at 457.837 kb on + strand, within H281DRAFT_00416 at 457.946 kb on - strand, within H281DRAFT_00416 at 458.027 kb on - strand, within H281DRAFT_00416 at 458.087 kb on - strand, within H281DRAFT_00416 at 458.247 kb on - strand at 458.439 kb on - strand, within H281DRAFT_00417 at 458.456 kb on - strand, within H281DRAFT_00417 at 458.574 kb on + strand, within H281DRAFT_00417 at 458.681 kb on + strand, within H281DRAFT_00417 at 458.687 kb on + strand, within H281DRAFT_00417 at 458.911 kb on + strand, within H281DRAFT_00417 at 459.120 kb on + strand at 459.120 kb on + strand at 459.148 kb on + strand at 459.215 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 456,647 + H281DRAFT_00415 0.35 -0.1 456,647 + H281DRAFT_00415 0.35 +0.4 456,747 - H281DRAFT_00415 0.44 +1.4 456,999 + H281DRAFT_00415 0.67 +1.1 457,000 - H281DRAFT_00415 0.67 +0.1 457,342 - +0.6 457,837 + H281DRAFT_00416 0.53 -1.4 457,946 - H281DRAFT_00416 0.65 -1.5 458,027 - H281DRAFT_00416 0.74 -0.6 458,087 - H281DRAFT_00416 0.81 -0.2 458,247 - +1.9 458,439 - H281DRAFT_00417 0.16 -0.8 458,456 - H281DRAFT_00417 0.18 -1.0 458,574 + H281DRAFT_00417 0.32 -0.9 458,681 + H281DRAFT_00417 0.45 +0.1 458,687 + H281DRAFT_00417 0.46 -0.3 458,911 + H281DRAFT_00417 0.73 -1.3 459,120 + -1.2 459,120 + +0.5 459,148 + +0.8 459,215 - +1.5
Or see this region's nucleotide sequence