Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00356 and H281DRAFT_00357 are separated by 43 nucleotides H281DRAFT_00357 and H281DRAFT_00358 are separated by 217 nucleotides H281DRAFT_00358 and H281DRAFT_00359 are separated by 167 nucleotides
H281DRAFT_00356: H281DRAFT_00356 - acetolactate synthase, large subunit, at 388,873 to 390,738
_00356
H281DRAFT_00357: H281DRAFT_00357 - transcriptional regulator, ArsR family, at 390,782 to 391,081
_00357
H281DRAFT_00358: H281DRAFT_00358 - Aldo/keto reductase, at 391,299 to 392,237
_00358
H281DRAFT_00359: H281DRAFT_00359 - Acyl-CoA dehydrogenase, at 392,405 to 393,535
_00359
Position (kb) 391
392
393 Strain fitness (log2 ratio) -2
-1
0
1 at 390.422 kb on - strand, within H281DRAFT_00356 at 390.432 kb on + strand, within H281DRAFT_00356 at 390.624 kb on - strand at 390.624 kb on - strand at 390.806 kb on - strand at 391.151 kb on - strand at 391.719 kb on + strand, within H281DRAFT_00358 at 391.719 kb on + strand, within H281DRAFT_00358 at 391.720 kb on - strand, within H281DRAFT_00358 at 391.720 kb on - strand, within H281DRAFT_00358 at 391.795 kb on + strand, within H281DRAFT_00358 at 392.522 kb on + strand, within H281DRAFT_00359
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 390,422 - H281DRAFT_00356 0.83 -1.4 390,432 + H281DRAFT_00356 0.84 -2.1 390,624 - -1.2 390,624 - -2.6 390,806 - -0.2 391,151 - +0.5 391,719 + H281DRAFT_00358 0.45 +1.4 391,719 + H281DRAFT_00358 0.45 -2.3 391,720 - H281DRAFT_00358 0.45 +0.5 391,720 - H281DRAFT_00358 0.45 -0.9 391,795 + H281DRAFT_00358 0.53 -0.6 392,522 + H281DRAFT_00359 0.10 -1.3
Or see this region's nucleotide sequence