Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00338 and H281DRAFT_00339 are separated by 168 nucleotides H281DRAFT_00339 and H281DRAFT_00340 are separated by 160 nucleotides H281DRAFT_00340 and H281DRAFT_00341 are separated by 24 nucleotides H281DRAFT_00341 and H281DRAFT_00342 are separated by 197 nucleotides
H281DRAFT_00338: H281DRAFT_00338 - Protein of unknown function (DUF2964), at 370,563 to 370,781
_00338
H281DRAFT_00339: H281DRAFT_00339 - Uncharacterized membrane protein, at 370,950 to 371,414
_00339
H281DRAFT_00340: H281DRAFT_00340 - glutamine amidotransferase, at 371,575 to 372,414
_00340
H281DRAFT_00341: H281DRAFT_00341 - Predicted periplasmic or secreted lipoprotein, at 372,439 to 372,792
_00341
H281DRAFT_00342: H281DRAFT_00342 - Uncharacterized conserved protein, at 372,990 to 373,913
_00342
Position (kb) 371
372
373 Strain fitness (log2 ratio) -1
0
1
2 at 370.631 kb on + strand, within H281DRAFT_00338 at 370.955 kb on + strand at 370.956 kb on - strand at 370.956 kb on - strand at 370.959 kb on + strand at 370.960 kb on - strand at 371.100 kb on + strand, within H281DRAFT_00339 at 371.176 kb on + strand, within H281DRAFT_00339 at 371.398 kb on + strand at 371.433 kb on - strand at 371.468 kb on + strand at 371.472 kb on - strand at 371.555 kb on + strand at 371.594 kb on - strand at 371.720 kb on - strand, within H281DRAFT_00340 at 371.925 kb on + strand, within H281DRAFT_00340 at 372.241 kb on + strand, within H281DRAFT_00340 at 372.242 kb on - strand, within H281DRAFT_00340 at 372.440 kb on + strand at 372.463 kb on + strand at 372.472 kb on - strand at 372.939 kb on + strand at 372.939 kb on + strand at 373.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 370,631 + H281DRAFT_00338 0.31 -0.0 370,955 + +0.1 370,956 - -1.5 370,956 - +0.4 370,959 + -0.6 370,960 - +1.6 371,100 + H281DRAFT_00339 0.32 +0.1 371,176 + H281DRAFT_00339 0.49 -0.8 371,398 + -0.6 371,433 - -1.5 371,468 + -0.5 371,472 - +0.5 371,555 + -1.1 371,594 - +2.3 371,720 - H281DRAFT_00340 0.17 +0.0 371,925 + H281DRAFT_00340 0.42 -0.9 372,241 + H281DRAFT_00340 0.79 -1.3 372,242 - H281DRAFT_00340 0.79 -0.8 372,440 + -0.2 372,463 + +1.0 372,472 - -0.5 372,939 + +1.4 372,939 + +0.7 373,010 - -0.2
Or see this region's nucleotide sequence