Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00303 and H281DRAFT_00304 are separated by 92 nucleotides H281DRAFT_00304 and H281DRAFT_00305 are separated by 22 nucleotides H281DRAFT_00305 and H281DRAFT_00306 are separated by 270 nucleotides
H281DRAFT_00303: H281DRAFT_00303 - formate-dependent phosphoribosylglycinamide formyltransferase, at 326,729 to 327,952
_00303
H281DRAFT_00304: H281DRAFT_00304 - hypothetical protein, at 328,045 to 328,272
_00304
H281DRAFT_00305: H281DRAFT_00305 - Membrane-bound inhibitor of C-type lysozyme, at 328,295 to 328,651
_00305
H281DRAFT_00306: H281DRAFT_00306 - acetolactate synthase-1/2/3 large subunit, at 328,922 to 330,574
_00306
Position (kb) 328
329 Strain fitness (log2 ratio) -1
0
1 at 327.305 kb on + strand, within H281DRAFT_00303 at 327.305 kb on + strand, within H281DRAFT_00303 at 327.306 kb on - strand, within H281DRAFT_00303 at 327.306 kb on - strand, within H281DRAFT_00303 at 327.404 kb on + strand, within H281DRAFT_00303 at 327.404 kb on + strand, within H281DRAFT_00303 at 327.404 kb on + strand, within H281DRAFT_00303 at 327.405 kb on - strand, within H281DRAFT_00303 at 327.446 kb on + strand, within H281DRAFT_00303 at 327.446 kb on + strand, within H281DRAFT_00303 at 327.446 kb on + strand, within H281DRAFT_00303 at 327.446 kb on + strand, within H281DRAFT_00303 at 327.447 kb on - strand, within H281DRAFT_00303 at 327.582 kb on + strand, within H281DRAFT_00303 at 327.582 kb on + strand, within H281DRAFT_00303 at 327.582 kb on + strand, within H281DRAFT_00303 at 327.583 kb on - strand, within H281DRAFT_00303 at 327.583 kb on - strand, within H281DRAFT_00303 at 327.583 kb on - strand, within H281DRAFT_00303 at 327.583 kb on - strand, within H281DRAFT_00303 at 327.583 kb on - strand, within H281DRAFT_00303 at 327.698 kb on - strand, within H281DRAFT_00303 at 327.735 kb on - strand, within H281DRAFT_00303 at 328.040 kb on + strand at 328.040 kb on + strand at 328.404 kb on - strand, within H281DRAFT_00305 at 328.439 kb on + strand, within H281DRAFT_00305 at 328.552 kb on + strand, within H281DRAFT_00305 at 328.552 kb on + strand, within H281DRAFT_00305 at 328.553 kb on - strand, within H281DRAFT_00305 at 328.553 kb on - strand, within H281DRAFT_00305 at 328.587 kb on - strand, within H281DRAFT_00305 at 328.687 kb on + strand at 328.687 kb on + strand at 328.771 kb on + strand at 328.772 kb on - strand at 328.774 kb on + strand at 328.774 kb on + strand at 328.775 kb on - strand at 328.775 kb on - strand at 328.901 kb on + strand at 328.973 kb on + strand at 328.973 kb on + strand at 328.973 kb on + strand at 328.974 kb on - strand at 329.291 kb on + strand, within H281DRAFT_00306 at 329.291 kb on + strand, within H281DRAFT_00306 at 329.292 kb on - strand, within H281DRAFT_00306 at 329.444 kb on + strand, within H281DRAFT_00306 at 329.444 kb on + strand, within H281DRAFT_00306 at 329.445 kb on - strand, within H281DRAFT_00306 at 329.647 kb on + strand, within H281DRAFT_00306 at 329.648 kb on - strand, within H281DRAFT_00306 at 329.648 kb on - strand, within H281DRAFT_00306
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 327,305 + H281DRAFT_00303 0.47 +0.4 327,305 + H281DRAFT_00303 0.47 +0.6 327,306 - H281DRAFT_00303 0.47 +1.0 327,306 - H281DRAFT_00303 0.47 -0.4 327,404 + H281DRAFT_00303 0.55 +0.8 327,404 + H281DRAFT_00303 0.55 -0.7 327,404 + H281DRAFT_00303 0.55 +1.1 327,405 - H281DRAFT_00303 0.55 -0.8 327,446 + H281DRAFT_00303 0.59 +1.7 327,446 + H281DRAFT_00303 0.59 -0.2 327,446 + H281DRAFT_00303 0.59 -0.2 327,446 + H281DRAFT_00303 0.59 -0.9 327,447 - H281DRAFT_00303 0.59 -0.5 327,582 + H281DRAFT_00303 0.70 +1.2 327,582 + H281DRAFT_00303 0.70 -0.4 327,582 + H281DRAFT_00303 0.70 +0.3 327,583 - H281DRAFT_00303 0.70 +0.3 327,583 - H281DRAFT_00303 0.70 -0.1 327,583 - H281DRAFT_00303 0.70 -0.6 327,583 - H281DRAFT_00303 0.70 -0.7 327,583 - H281DRAFT_00303 0.70 -0.3 327,698 - H281DRAFT_00303 0.79 +0.2 327,735 - H281DRAFT_00303 0.82 -0.0 328,040 + +1.4 328,040 + -0.1 328,404 - H281DRAFT_00305 0.31 -1.0 328,439 + H281DRAFT_00305 0.40 -0.9 328,552 + H281DRAFT_00305 0.72 -0.2 328,552 + H281DRAFT_00305 0.72 -0.5 328,553 - H281DRAFT_00305 0.72 +0.2 328,553 - H281DRAFT_00305 0.72 +0.5 328,587 - H281DRAFT_00305 0.82 -1.3 328,687 + +1.1 328,687 + +0.7 328,771 + -0.1 328,772 - -0.9 328,774 + +0.1 328,774 + -0.9 328,775 - +0.5 328,775 - -0.1 328,901 + -1.2 328,973 + -0.6 328,973 + -0.5 328,973 + -0.6 328,974 - +0.1 329,291 + H281DRAFT_00306 0.22 +0.8 329,291 + H281DRAFT_00306 0.22 -1.6 329,292 - H281DRAFT_00306 0.22 +0.1 329,444 + H281DRAFT_00306 0.32 +0.1 329,444 + H281DRAFT_00306 0.32 +0.6 329,445 - H281DRAFT_00306 0.32 -0.7 329,647 + H281DRAFT_00306 0.44 +0.2 329,648 - H281DRAFT_00306 0.44 +0.1 329,648 - H281DRAFT_00306 0.44 -0.9
Or see this region's nucleotide sequence