Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00137

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00136 and H281DRAFT_00137 are separated by 27 nucleotidesH281DRAFT_00137 and H281DRAFT_00138 overlap by 4 nucleotidesH281DRAFT_00138 and H281DRAFT_00139 are separated by 37 nucleotides H281DRAFT_00136: H281DRAFT_00136 - vitamin B12 transporter, at 141,007 to 142,932 _00136 H281DRAFT_00137: H281DRAFT_00137 - iron complex transport system permease protein, at 142,960 to 144,018 _00137 H281DRAFT_00138: H281DRAFT_00138 - iron complex transport system ATP-binding protein, at 144,015 to 144,854 _00138 H281DRAFT_00139: H281DRAFT_00139 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, at 144,892 to 145,953 _00139 Position (kb) 142 143 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 142.018 kb on + strand, within H281DRAFT_00136at 142.052 kb on - strand, within H281DRAFT_00136at 142.186 kb on - strand, within H281DRAFT_00136at 142.186 kb on - strand, within H281DRAFT_00136at 142.212 kb on - strand, within H281DRAFT_00136at 142.218 kb on + strand, within H281DRAFT_00136at 142.219 kb on - strand, within H281DRAFT_00136at 142.219 kb on - strand, within H281DRAFT_00136at 142.318 kb on + strand, within H281DRAFT_00136at 142.319 kb on - strand, within H281DRAFT_00136at 142.358 kb on - strand, within H281DRAFT_00136at 142.358 kb on - strand, within H281DRAFT_00136at 142.358 kb on - strand, within H281DRAFT_00136at 142.360 kb on + strand, within H281DRAFT_00136at 142.495 kb on + strand, within H281DRAFT_00136at 142.519 kb on + strand, within H281DRAFT_00136at 142.519 kb on + strand, within H281DRAFT_00136at 142.520 kb on - strand, within H281DRAFT_00136at 142.584 kb on - strand, within H281DRAFT_00136at 142.822 kb on + strandat 142.822 kb on + strandat 142.823 kb on - strandat 142.880 kb on - strandat 142.903 kb on + strandat 142.904 kb on - strandat 142.904 kb on - strandat 143.293 kb on + strand, within H281DRAFT_00137at 143.293 kb on + strand, within H281DRAFT_00137at 143.294 kb on - strand, within H281DRAFT_00137at 143.294 kb on - strand, within H281DRAFT_00137at 143.297 kb on + strand, within H281DRAFT_00137at 143.298 kb on - strand, within H281DRAFT_00137at 143.300 kb on + strand, within H281DRAFT_00137at 143.743 kb on + strand, within H281DRAFT_00137at 143.823 kb on + strand, within H281DRAFT_00137at 143.823 kb on + strandat 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.857 kb on - strand, within H281DRAFT_00137at 143.898 kb on - strand, within H281DRAFT_00137at 144.236 kb on + strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.436 kb on + strand, within H281DRAFT_00138at 144.718 kb on + strand, within H281DRAFT_00138at 144.719 kb on - strand, within H281DRAFT_00138at 144.877 kb on - strandat 144.930 kb on - strandat 144.951 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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142,018 + H281DRAFT_00136 0.52 +0.3
142,052 - H281DRAFT_00136 0.54 -0.3
142,186 - H281DRAFT_00136 0.61 -0.1
142,186 - H281DRAFT_00136 0.61 -0.2
142,212 - H281DRAFT_00136 0.63 -0.1
142,218 + H281DRAFT_00136 0.63 +0.1
142,219 - H281DRAFT_00136 0.63 -1.5
142,219 - H281DRAFT_00136 0.63 -1.2
142,318 + H281DRAFT_00136 0.68 -1.5
142,319 - H281DRAFT_00136 0.68 -0.4
142,358 - H281DRAFT_00136 0.70 -0.9
142,358 - H281DRAFT_00136 0.70 +0.0
142,358 - H281DRAFT_00136 0.70 -0.1
142,360 + H281DRAFT_00136 0.70 -3.5
142,495 + H281DRAFT_00136 0.77 +0.1
142,519 + H281DRAFT_00136 0.79 -0.6
142,519 + H281DRAFT_00136 0.79 +1.4
142,520 - H281DRAFT_00136 0.79 -0.1
142,584 - H281DRAFT_00136 0.82 +0.1
142,822 + +1.0
142,822 + +0.3
142,823 - +0.4
142,880 - +2.4
142,903 + -0.7
142,904 - -2.5
142,904 - -2.8
143,293 + H281DRAFT_00137 0.31 +0.5
143,293 + H281DRAFT_00137 0.31 +0.4
143,294 - H281DRAFT_00137 0.32 -1.7
143,294 - H281DRAFT_00137 0.32 -1.2
143,297 + H281DRAFT_00137 0.32 +1.2
143,298 - H281DRAFT_00137 0.32 +0.4
143,300 + H281DRAFT_00137 0.32 +0.8
143,743 + H281DRAFT_00137 0.74 -0.5
143,823 + H281DRAFT_00137 0.81 -0.7
143,823 + +0.8
143,856 + H281DRAFT_00137 0.85 -0.8
143,856 + H281DRAFT_00137 0.85 -0.8
143,856 + H281DRAFT_00137 0.85 +0.2
143,856 + H281DRAFT_00137 0.85 +0.0
143,856 + H281DRAFT_00137 0.85 -0.5
143,857 - H281DRAFT_00137 0.85 +0.1
143,898 - H281DRAFT_00137 0.89 -1.2
144,236 + H281DRAFT_00138 0.26 +1.5
144,237 - H281DRAFT_00138 0.26 -2.0
144,237 - H281DRAFT_00138 0.26 -1.5
144,237 - H281DRAFT_00138 0.26 -0.0
144,237 - H281DRAFT_00138 0.26 -1.5
144,237 - H281DRAFT_00138 0.26 -1.2
144,436 + H281DRAFT_00138 0.50 -0.4
144,718 + H281DRAFT_00138 0.84 +0.3
144,719 - H281DRAFT_00138 0.84 -0.0
144,877 - -0.5
144,930 - -0.8
144,951 - -1.8

Or see this region's nucleotide sequence