Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00100 and H281DRAFT_00101 are separated by 11 nucleotides H281DRAFT_00101 and H281DRAFT_00102 are separated by 59 nucleotides
H281DRAFT_00100: H281DRAFT_00100 - outer membrane protein, at 104,299 to 105,849
_00100
H281DRAFT_00101: H281DRAFT_00101 - Rhodanese-related sulfurtransferase, at 105,861 to 106,184
_00101
H281DRAFT_00102: H281DRAFT_00102 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 106,244 to 106,897
_00102
Position (kb) 105
106
107 Strain fitness (log2 ratio) -1
0
1
2
3 at 104.910 kb on + strand, within H281DRAFT_00100 at 104.911 kb on - strand, within H281DRAFT_00100 at 104.983 kb on - strand, within H281DRAFT_00100 at 104.983 kb on - strand, within H281DRAFT_00100 at 105.079 kb on + strand, within H281DRAFT_00100 at 105.089 kb on + strand, within H281DRAFT_00100 at 105.090 kb on - strand, within H281DRAFT_00100 at 105.272 kb on + strand, within H281DRAFT_00100 at 105.272 kb on + strand, within H281DRAFT_00100 at 105.510 kb on - strand, within H281DRAFT_00100 at 105.555 kb on - strand, within H281DRAFT_00100 at 105.555 kb on - strand, within H281DRAFT_00100 at 105.560 kb on + strand, within H281DRAFT_00100 at 105.560 kb on + strand, within H281DRAFT_00100 at 105.560 kb on + strand, within H281DRAFT_00100 at 105.560 kb on + strand at 105.561 kb on - strand, within H281DRAFT_00100 at 105.561 kb on - strand, within H281DRAFT_00100 at 105.740 kb on + strand at 105.865 kb on + strand at 105.865 kb on + strand at 105.866 kb on - strand at 106.468 kb on - strand, within H281DRAFT_00102 at 106.630 kb on - strand, within H281DRAFT_00102 at 107.028 kb on - strand at 107.028 kb on - strand at 107.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 104,910 + H281DRAFT_00100 0.39 -0.2 104,911 - H281DRAFT_00100 0.39 -0.1 104,983 - H281DRAFT_00100 0.44 -1.3 104,983 - H281DRAFT_00100 0.44 -0.7 105,079 + H281DRAFT_00100 0.50 -1.3 105,089 + H281DRAFT_00100 0.51 -0.2 105,090 - H281DRAFT_00100 0.51 +0.6 105,272 + H281DRAFT_00100 0.63 +0.0 105,272 + H281DRAFT_00100 0.63 +0.9 105,510 - H281DRAFT_00100 0.78 +0.8 105,555 - H281DRAFT_00100 0.81 +0.2 105,555 - H281DRAFT_00100 0.81 -1.3 105,560 + H281DRAFT_00100 0.81 -1.0 105,560 + H281DRAFT_00100 0.81 -0.8 105,560 + H281DRAFT_00100 0.81 -0.6 105,560 + +3.1 105,561 - H281DRAFT_00100 0.81 -0.4 105,561 - H281DRAFT_00100 0.81 -1.7 105,740 + -1.4 105,865 + +0.8 105,865 + +0.2 105,866 - +0.4 106,468 - H281DRAFT_00102 0.34 -0.8 106,630 - H281DRAFT_00102 0.59 -0.2 107,028 - -1.1 107,028 - -0.7 107,165 - +0.3
Or see this region's nucleotide sequence