Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00016 and H281DRAFT_00017 are separated by 143 nucleotides H281DRAFT_00017 and H281DRAFT_00018 are separated by 87 nucleotides
H281DRAFT_00016: H281DRAFT_00016 - beta-glucosidase, at 15,933 to 18,224
_00016
H281DRAFT_00017: H281DRAFT_00017 - hypothetical protein, at 18,368 to 19,171
_00017
H281DRAFT_00018: H281DRAFT_00018 - hypothetical protein, at 19,259 to 19,903
_00018
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.530 kb on - strand, within H281DRAFT_00016 at 17.530 kb on - strand, within H281DRAFT_00016 at 17.636 kb on + strand, within H281DRAFT_00016 at 17.637 kb on - strand, within H281DRAFT_00016 at 17.705 kb on - strand, within H281DRAFT_00016 at 17.725 kb on - strand, within H281DRAFT_00016 at 18.000 kb on + strand at 18.000 kb on + strand at 18.001 kb on - strand at 18.001 kb on - strand at 18.001 kb on - strand at 18.001 kb on - strand at 18.001 kb on - strand at 18.032 kb on + strand at 18.033 kb on - strand at 18.033 kb on - strand at 18.084 kb on - strand at 18.084 kb on - strand at 18.084 kb on - strand at 18.084 kb on - strand at 18.090 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.282 kb on - strand at 18.343 kb on + strand at 18.344 kb on - strand at 18.345 kb on + strand at 18.345 kb on + strand at 18.346 kb on - strand at 18.346 kb on - strand at 18.737 kb on + strand, within H281DRAFT_00017 at 18.740 kb on - strand, within H281DRAFT_00017 at 18.804 kb on - strand, within H281DRAFT_00017 at 18.833 kb on + strand, within H281DRAFT_00017 at 18.833 kb on + strand, within H281DRAFT_00017 at 18.834 kb on - strand, within H281DRAFT_00017 at 18.914 kb on - strand, within H281DRAFT_00017 at 18.954 kb on - strand, within H281DRAFT_00017 at 18.954 kb on - strand, within H281DRAFT_00017 at 19.116 kb on + strand at 19.248 kb on + strand at 19.432 kb on + strand, within H281DRAFT_00018 at 19.599 kb on + strand, within H281DRAFT_00018 at 19.635 kb on + strand, within H281DRAFT_00018 at 19.637 kb on + strand, within H281DRAFT_00018 at 19.638 kb on - strand, within H281DRAFT_00018 at 19.680 kb on - strand, within H281DRAFT_00018 at 19.684 kb on + strand, within H281DRAFT_00018 at 19.684 kb on + strand, within H281DRAFT_00018 at 19.685 kb on - strand, within H281DRAFT_00018 at 19.685 kb on - strand, within H281DRAFT_00018 at 19.685 kb on - strand, within H281DRAFT_00018 at 19.685 kb on - strand, within H281DRAFT_00018 at 19.755 kb on + strand, within H281DRAFT_00018 at 19.756 kb on - strand, within H281DRAFT_00018 at 19.756 kb on - strand, within H281DRAFT_00018 at 19.793 kb on - strand at 19.836 kb on + strand, within H281DRAFT_00018 at 20.050 kb on - strand at 20.050 kb on - strand at 20.050 kb on - strand at 20.074 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 17,530 - H281DRAFT_00016 0.70 +0.4 17,530 - H281DRAFT_00016 0.70 +0.5 17,636 + H281DRAFT_00016 0.74 -0.3 17,637 - H281DRAFT_00016 0.74 +0.4 17,705 - H281DRAFT_00016 0.77 +0.2 17,725 - H281DRAFT_00016 0.78 +0.3 18,000 + -0.2 18,000 + -0.7 18,001 - -1.1 18,001 - -0.5 18,001 - -0.6 18,001 - +1.0 18,001 - +0.4 18,032 + -2.0 18,033 - +0.1 18,033 - +0.6 18,084 - +0.4 18,084 - -1.4 18,084 - +1.0 18,084 - +1.5 18,090 + +0.1 18,115 + +1.2 18,115 + +0.6 18,282 - +0.7 18,343 + -0.5 18,344 - -1.0 18,345 + -0.0 18,345 + +1.2 18,346 - +0.4 18,346 - -0.4 18,737 + H281DRAFT_00017 0.46 +0.4 18,740 - H281DRAFT_00017 0.46 +1.2 18,804 - H281DRAFT_00017 0.54 -0.5 18,833 + H281DRAFT_00017 0.58 +0.2 18,833 + H281DRAFT_00017 0.58 +2.2 18,834 - H281DRAFT_00017 0.58 +0.7 18,914 - H281DRAFT_00017 0.68 -0.2 18,954 - H281DRAFT_00017 0.73 +0.0 18,954 - H281DRAFT_00017 0.73 +1.1 19,116 + +0.4 19,248 + -0.2 19,432 + H281DRAFT_00018 0.27 +0.5 19,599 + H281DRAFT_00018 0.53 +0.4 19,635 + H281DRAFT_00018 0.58 -0.5 19,637 + H281DRAFT_00018 0.59 -0.7 19,638 - H281DRAFT_00018 0.59 -1.2 19,680 - H281DRAFT_00018 0.65 +0.0 19,684 + H281DRAFT_00018 0.66 -0.2 19,684 + H281DRAFT_00018 0.66 -0.4 19,685 - H281DRAFT_00018 0.66 -0.4 19,685 - H281DRAFT_00018 0.66 +0.4 19,685 - H281DRAFT_00018 0.66 -0.3 19,685 - H281DRAFT_00018 0.66 -0.0 19,755 + H281DRAFT_00018 0.77 -0.6 19,756 - H281DRAFT_00018 0.77 -0.8 19,756 - H281DRAFT_00018 0.77 +0.7 19,793 - +0.8 19,836 + H281DRAFT_00018 0.89 -0.8 20,050 - -0.6 20,050 - +0.3 20,050 - -0.3 20,074 + +0.0
Or see this region's nucleotide sequence