Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00004 and H281DRAFT_00005 are separated by 155 nucleotides H281DRAFT_00005 and H281DRAFT_00006 are separated by 504 nucleotides
H281DRAFT_00004: H281DRAFT_00004 - hypothetical protein, at 4,600 to 5,139
_00004
H281DRAFT_00005: H281DRAFT_00005 - hypothetical protein, at 5,295 to 5,576
_00005
H281DRAFT_00006: H281DRAFT_00006 - hypothetical protein, at 6,081 to 6,458
_00006
Position (kb) 5
6 Strain fitness (log2 ratio) -2
-1
0
1 at 4.352 kb on + strand at 4.352 kb on + strand at 4.353 kb on - strand at 4.353 kb on - strand at 4.353 kb on - strand at 4.373 kb on - strand at 4.535 kb on + strand at 4.536 kb on - strand at 4.536 kb on - strand at 4.557 kb on + strand at 4.557 kb on + strand at 4.557 kb on + strand at 4.565 kb on - strand at 4.826 kb on + strand, within H281DRAFT_00004 at 4.827 kb on - strand, within H281DRAFT_00004 at 4.897 kb on + strand, within H281DRAFT_00004 at 4.993 kb on + strand, within H281DRAFT_00004 at 5.085 kb on - strand, within H281DRAFT_00004 at 5.221 kb on - strand at 5.251 kb on + strand at 5.411 kb on + strand, within H281DRAFT_00005 at 5.411 kb on + strand, within H281DRAFT_00005 at 5.411 kb on + strand, within H281DRAFT_00005 at 5.481 kb on - strand, within H281DRAFT_00005 at 5.758 kb on - strand at 5.789 kb on + strand at 5.812 kb on + strand at 5.812 kb on + strand at 6.135 kb on - strand, within H281DRAFT_00006 at 6.135 kb on - strand, within H281DRAFT_00006 at 6.449 kb on - strand at 6.449 kb on - strand at 6.449 kb on - strand at 6.495 kb on + strand at 6.571 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 4,352 + -0.1 4,352 + -0.2 4,353 - -0.5 4,353 - -0.9 4,353 - +0.2 4,373 - -1.2 4,535 + -0.0 4,536 - -0.1 4,536 - -0.3 4,557 + -0.1 4,557 + -0.2 4,557 + +0.3 4,565 - +0.4 4,826 + H281DRAFT_00004 0.42 +0.1 4,827 - H281DRAFT_00004 0.42 -0.2 4,897 + H281DRAFT_00004 0.55 -0.3 4,993 + H281DRAFT_00004 0.73 -0.3 5,085 - H281DRAFT_00004 0.90 -2.4 5,221 - +1.1 5,251 + +0.6 5,411 + H281DRAFT_00005 0.41 -0.3 5,411 + H281DRAFT_00005 0.41 +0.7 5,411 + H281DRAFT_00005 0.41 -0.0 5,481 - H281DRAFT_00005 0.66 -0.0 5,758 - +0.5 5,789 + -1.0 5,812 + -0.9 5,812 + +0.3 6,135 - H281DRAFT_00006 0.14 -0.4 6,135 - H281DRAFT_00006 0.14 +0.5 6,449 - -0.8 6,449 - -0.5 6,449 - +0.2 6,495 + -0.3 6,571 + +1.2
Or see this region's nucleotide sequence