Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2322

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2319 and Ga0059261_2320 overlap by 4 nucleotidesGa0059261_2320 and Ga0059261_2321 are separated by 210 nucleotidesGa0059261_2321 and Ga0059261_2322 are separated by 25 nucleotidesGa0059261_2322 and Ga0059261_2323 overlap by 4 nucleotides Ga0059261_2319: Ga0059261_2319 - NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding, at 2,431,560 to 2,432,432 _2319 Ga0059261_2320: Ga0059261_2320 - Uncharacterized relative of glutathione S-transferase, MAPEG superfamily, at 2,432,429 to 2,432,860 _2320 Ga0059261_2321: Ga0059261_2321 - LSU ribosomal protein L32P, at 2,433,071 to 2,433,250 _2321 Ga0059261_2322: Ga0059261_2322 - phosphate:acyl-[acyl carrier protein] acyltransferase, at 2,433,276 to 2,434,307 _2322 Ga0059261_2323: Ga0059261_2323 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 2,434,304 to 2,435,284 _2323 Position (kb) 2433 2434 2435Strain fitness (log2 ratio) -1 0 1at 2432.388 kb on + strandat 2432.388 kb on + strandat 2432.388 kb on + strandat 2432.389 kb on - strandat 2432.389 kb on - strandat 2432.389 kb on - strandat 2432.430 kb on + strandat 2432.430 kb on + strandat 2432.431 kb on - strandat 2432.431 kb on - strandat 2432.431 kb on - strandat 2432.431 kb on - strandat 2432.478 kb on + strand, within Ga0059261_2320at 2432.478 kb on + strand, within Ga0059261_2320at 2432.479 kb on - strand, within Ga0059261_2320at 2432.479 kb on - strand, within Ga0059261_2320at 2432.496 kb on + strand, within Ga0059261_2320at 2432.496 kb on + strand, within Ga0059261_2320at 2432.496 kb on + strand, within Ga0059261_2320at 2432.497 kb on - strand, within Ga0059261_2320at 2432.497 kb on - strand, within Ga0059261_2320at 2432.497 kb on - strand, within Ga0059261_2320at 2432.497 kb on - strand, within Ga0059261_2320at 2432.685 kb on + strand, within Ga0059261_2320at 2432.685 kb on + strand, within Ga0059261_2320at 2432.685 kb on + strand, within Ga0059261_2320at 2432.686 kb on - strand, within Ga0059261_2320at 2432.848 kb on + strandat 2432.849 kb on - strandat 2432.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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2,432,388 + -0.8
2,432,388 + +0.1
2,432,388 + +0.1
2,432,389 - +0.1
2,432,389 - -0.3
2,432,389 - -0.1
2,432,430 + -0.3
2,432,430 + -0.8
2,432,431 - +0.3
2,432,431 - -0.8
2,432,431 - +0.8
2,432,431 - -0.5
2,432,478 + Ga0059261_2320 0.11 +0.5
2,432,478 + Ga0059261_2320 0.11 -0.3
2,432,479 - Ga0059261_2320 0.12 -0.0
2,432,479 - Ga0059261_2320 0.12 +1.0
2,432,496 + Ga0059261_2320 0.16 +0.4
2,432,496 + Ga0059261_2320 0.16 +0.4
2,432,496 + Ga0059261_2320 0.16 +0.2
2,432,497 - Ga0059261_2320 0.16 +0.4
2,432,497 - Ga0059261_2320 0.16 +0.5
2,432,497 - Ga0059261_2320 0.16 -0.5
2,432,497 - Ga0059261_2320 0.16 -0.6
2,432,685 + Ga0059261_2320 0.59 +0.9
2,432,685 + Ga0059261_2320 0.59 +0.6
2,432,685 + Ga0059261_2320 0.59 -1.0
2,432,686 - Ga0059261_2320 0.59 -0.2
2,432,848 + -0.4
2,432,849 - -0.2
2,432,849 - -0.4

Or see this region's nucleotide sequence