Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0626 and Ga0059261_0627 overlap by 4 nucleotides Ga0059261_0627 and Ga0059261_0628 overlap by 4 nucleotides Ga0059261_0628 and Ga0059261_0629 overlap by 47 nucleotides Ga0059261_0629 and Ga0059261_0630 overlap by 13 nucleotides
Ga0059261_0626: Ga0059261_0626 - Fructose-2,6-bisphosphatase, at 666,161 to 666,730
_0626
Ga0059261_0627: Ga0059261_0627 - cobalamin-5'-phosphate synthase (EC 2.7.8.26), at 666,727 to 667,443
_0627
Ga0059261_0628: Ga0059261_0628 - L-threonine O-3-phosphate decarboxylase (EC 4.1.1.81), at 667,440 to 668,399
_0628
Ga0059261_0629: Ga0059261_0629 - cobalamin biosynthesis protein CobD, at 668,353 to 669,324
_0629
Ga0059261_0630: Ga0059261_0630 - adenosylcobyric acid synthase (glutamine-hydrolysing) (EC 6.3.5.10), at 669,312 to 670,775
_0630
Position (kb)
667
668
669 Strain fitness (log2 ratio)
-1
0
1 at 666.656 kb on + strand, within Ga0059261_0626 at 666.656 kb on + strand, within Ga0059261_0626 at 666.657 kb on - strand, within Ga0059261_0626 at 666.885 kb on + strand, within Ga0059261_0627 at 667.635 kb on + strand, within Ga0059261_0628 at 667.636 kb on - strand at 667.728 kb on + strand, within Ga0059261_0628 at 667.743 kb on + strand, within Ga0059261_0628 at 667.744 kb on - strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.121 kb on + strand, within Ga0059261_0628 at 668.122 kb on - strand, within Ga0059261_0628 at 668.122 kb on - strand, within Ga0059261_0628 at 668.317 kb on - strand at 668.317 kb on - strand at 668.458 kb on + strand, within Ga0059261_0629 at 668.458 kb on + strand, within Ga0059261_0629 at 668.458 kb on + strand, within Ga0059261_0629 at 668.459 kb on - strand at 668.459 kb on - strand, within Ga0059261_0629 at 668.816 kb on + strand, within Ga0059261_0629 at 668.816 kb on + strand, within Ga0059261_0629 at 668.889 kb on - strand, within Ga0059261_0629 at 668.908 kb on - strand, within Ga0059261_0629 at 668.908 kb on - strand, within Ga0059261_0629 at 668.917 kb on + strand, within Ga0059261_0629 at 668.917 kb on + strand, within Ga0059261_0629 at 668.918 kb on - strand, within Ga0059261_0629 at 668.918 kb on - strand, within Ga0059261_0629 at 668.918 kb on - strand, within Ga0059261_0629 at 668.918 kb on - strand, within Ga0059261_0629 at 668.918 kb on - strand, within Ga0059261_0629 at 669.178 kb on + strand, within Ga0059261_0629 at 669.178 kb on + strand, within Ga0059261_0629 at 669.178 kb on + strand, within Ga0059261_0629 at 669.178 kb on + strand at 669.179 kb on - strand, within Ga0059261_0629 at 669.179 kb on - strand, within Ga0059261_0629 at 669.179 kb on - strand, within Ga0059261_0629 at 669.265 kb on + strand at 669.265 kb on + strand at 669.265 kb on + strand at 669.265 kb on + strand at 669.266 kb on - strand at 669.266 kb on - strand at 669.266 kb on - strand at 669.266 kb on - strand at 669.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 666,656 + Ga0059261_0626 0.87 -0.5 666,656 + Ga0059261_0626 0.87 -0.8 666,657 - Ga0059261_0626 0.87 -0.1 666,885 + Ga0059261_0627 0.22 -1.1 667,635 + Ga0059261_0628 0.20 +1.5 667,636 - +0.5 667,728 + Ga0059261_0628 0.30 +0.1 667,743 + Ga0059261_0628 0.32 -0.3 667,744 - Ga0059261_0628 0.32 +0.3 668,121 + Ga0059261_0628 0.71 -0.0 668,121 + Ga0059261_0628 0.71 +0.6 668,121 + Ga0059261_0628 0.71 -0.5 668,121 + Ga0059261_0628 0.71 +0.3 668,121 + Ga0059261_0628 0.71 +0.1 668,122 - Ga0059261_0628 0.71 +0.5 668,122 - Ga0059261_0628 0.71 -0.5 668,317 - +0.1 668,317 - -0.7 668,458 + Ga0059261_0629 0.11 -0.1 668,458 + Ga0059261_0629 0.11 +0.6 668,458 + Ga0059261_0629 0.11 -0.1 668,459 - +0.8 668,459 - Ga0059261_0629 0.11 -1.2 668,816 + Ga0059261_0629 0.48 -0.3 668,816 + Ga0059261_0629 0.48 +0.0 668,889 - Ga0059261_0629 0.55 -0.6 668,908 - Ga0059261_0629 0.57 -0.4 668,908 - Ga0059261_0629 0.57 -0.3 668,917 + Ga0059261_0629 0.58 +0.3 668,917 + Ga0059261_0629 0.58 +0.0 668,918 - Ga0059261_0629 0.58 +0.8 668,918 - Ga0059261_0629 0.58 -1.5 668,918 - Ga0059261_0629 0.58 +0.4 668,918 - Ga0059261_0629 0.58 -0.2 668,918 - Ga0059261_0629 0.58 -0.9 669,178 + Ga0059261_0629 0.85 -0.0 669,178 + Ga0059261_0629 0.85 +0.4 669,178 + Ga0059261_0629 0.85 +0.6 669,178 + +1.5 669,179 - Ga0059261_0629 0.85 -0.6 669,179 - Ga0059261_0629 0.85 +1.5 669,179 - Ga0059261_0629 0.85 -0.6 669,265 + -0.0 669,265 + -0.7 669,265 + +0.4 669,265 + +0.2 669,266 - +0.3 669,266 - +0.3 669,266 - +0.5 669,266 - -0.5 669,266 - -0.5
Or see this region's nucleotide sequence