Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0550

Experiment: D-Raffinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0548 and Ga0059261_0549 overlap by 4 nucleotidesGa0059261_0549 and Ga0059261_0550 overlap by 4 nucleotidesGa0059261_0550 and Ga0059261_0551 overlap by 1 nucleotidesGa0059261_0551 and Ga0059261_0552 are separated by 43 nucleotides Ga0059261_0548: Ga0059261_0548 - Gluconate 2-dehydrogenase subunit 3, at 563,272 to 563,841 _0548 Ga0059261_0549: Ga0059261_0549 - Domain of Unknown Function (DUF1080), at 563,838 to 564,653 _0549 Ga0059261_0550: Ga0059261_0550 - Hydroxypyruvate isomerase, at 564,650 to 565,573 _0550 Ga0059261_0551: Ga0059261_0551 - Cytochrome c2, at 565,573 to 565,956 _0551 Ga0059261_0552: Ga0059261_0552 - Predicted dehydrogenases and related proteins, at 566,000 to 567,166 _0552 Position (kb) 564 565 566Strain fitness (log2 ratio) -2 -1 0 1at 563.783 kb on + strand, within Ga0059261_0548at 563.783 kb on + strand, within Ga0059261_0548at 563.784 kb on - strand, within Ga0059261_0548at 563.892 kb on + strandat 563.969 kb on - strand, within Ga0059261_0549at 564.052 kb on + strand, within Ga0059261_0549at 564.052 kb on + strand, within Ga0059261_0549at 564.052 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.103 kb on - strand, within Ga0059261_0549at 564.103 kb on - strand, within Ga0059261_0549at 564.103 kb on - strand, within Ga0059261_0549at 564.112 kb on + strand, within Ga0059261_0549at 564.112 kb on + strand, within Ga0059261_0549at 564.113 kb on - strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.235 kb on + strand, within Ga0059261_0549at 564.235 kb on + strand, within Ga0059261_0549at 564.260 kb on + strand, within Ga0059261_0549at 564.260 kb on + strand, within Ga0059261_0549at 564.684 kb on + strandat 564.685 kb on - strandat 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.853 kb on - strand, within Ga0059261_0550at 564.853 kb on - strand, within Ga0059261_0550at 564.919 kb on - strand, within Ga0059261_0550at 564.972 kb on + strand, within Ga0059261_0550at 564.972 kb on + strand, within Ga0059261_0550at 564.972 kb on + strand, within Ga0059261_0550at 564.973 kb on - strand, within Ga0059261_0550at 564.973 kb on - strand, within Ga0059261_0550at 564.973 kb on - strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.998 kb on + strandat 564.999 kb on - strand, within Ga0059261_0550at 564.999 kb on - strand, within Ga0059261_0550at 565.112 kb on - strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.462 kb on - strand, within Ga0059261_0550at 565.462 kb on - strand, within Ga0059261_0550at 565.598 kb on + strandat 565.598 kb on + strandat 565.598 kb on + strandat 565.598 kb on + strandat 565.599 kb on - strandat 565.599 kb on - strandat 565.742 kb on + strand, within Ga0059261_0551at 565.742 kb on + strand, within Ga0059261_0551at 565.743 kb on - strand, within Ga0059261_0551at 565.779 kb on + strand, within Ga0059261_0551at 566.172 kb on + strand, within Ga0059261_0552at 566.172 kb on + strand, within Ga0059261_0552at 566.176 kb on + strand, within Ga0059261_0552at 566.176 kb on + strand, within Ga0059261_0552at 566.176 kb on + strand, within Ga0059261_0552at 566.177 kb on - strand, within Ga0059261_0552at 566.177 kb on - strand, within Ga0059261_0552at 566.177 kb on - strandat 566.177 kb on - strand, within Ga0059261_0552at 566.177 kb on - strandat 566.196 kb on + strand, within Ga0059261_0552

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
remove
563,783 + Ga0059261_0548 0.90 +0.0
563,783 + Ga0059261_0548 0.90 -0.9
563,784 - Ga0059261_0548 0.90 -0.6
563,892 + -2.5
563,969 - Ga0059261_0549 0.16 -0.5
564,052 + Ga0059261_0549 0.26 -1.8
564,052 + Ga0059261_0549 0.26 -1.3
564,052 + Ga0059261_0549 0.26 -1.3
564,102 + Ga0059261_0549 0.32 -0.9
564,102 + Ga0059261_0549 0.32 -0.9
564,102 + Ga0059261_0549 0.32 -0.8
564,102 + Ga0059261_0549 0.32 -1.0
564,103 - Ga0059261_0549 0.32 -2.2
564,103 - Ga0059261_0549 0.32 -1.1
564,103 - Ga0059261_0549 0.32 -1.4
564,112 + Ga0059261_0549 0.34 -2.2
564,112 + Ga0059261_0549 0.34 -1.3
564,113 - Ga0059261_0549 0.34 +0.7
564,196 + Ga0059261_0549 0.44 -0.3
564,196 + Ga0059261_0549 0.44 -0.8
564,196 + Ga0059261_0549 0.44 -0.5
564,196 + Ga0059261_0549 0.44 -1.4
564,196 + Ga0059261_0549 0.44 -0.1
564,196 + Ga0059261_0549 0.44 -0.8
564,197 - Ga0059261_0549 0.44 -0.3
564,197 - Ga0059261_0549 0.44 -1.1
564,197 - Ga0059261_0549 0.44 -0.5
564,197 - Ga0059261_0549 0.44 +0.1
564,197 - Ga0059261_0549 0.44 -0.7
564,197 - Ga0059261_0549 0.44 -1.0
564,235 + Ga0059261_0549 0.49 -1.6
564,235 + Ga0059261_0549 0.49 -1.0
564,260 + Ga0059261_0549 0.52 -1.8
564,260 + Ga0059261_0549 0.52 -0.7
564,684 + -1.0
564,685 - -1.4
564,759 + Ga0059261_0550 0.12 -0.3
564,759 + Ga0059261_0550 0.12 -1.7
564,759 + Ga0059261_0550 0.12 +0.7
564,759 + Ga0059261_0550 0.12 +0.3
564,760 - Ga0059261_0550 0.12 +0.4
564,760 - Ga0059261_0550 0.12 -0.9
564,760 - Ga0059261_0550 0.12 -0.3
564,760 - Ga0059261_0550 0.12 -1.3
564,795 + Ga0059261_0550 0.16 -1.2
564,795 + Ga0059261_0550 0.16 -1.2
564,795 + Ga0059261_0550 0.16 +0.7
564,795 + Ga0059261_0550 0.16 -1.4
564,796 - Ga0059261_0550 0.16 -1.0
564,796 - Ga0059261_0550 0.16 +0.3
564,796 - Ga0059261_0550 0.16 -0.7
564,796 - Ga0059261_0550 0.16 -1.4
564,796 - Ga0059261_0550 0.16 -0.8
564,796 - Ga0059261_0550 0.16 -1.1
564,796 - Ga0059261_0550 0.16 +0.1
564,853 - Ga0059261_0550 0.22 -1.6
564,853 - Ga0059261_0550 0.22 -0.1
564,919 - Ga0059261_0550 0.29 -0.7
564,972 + Ga0059261_0550 0.35 -1.4
564,972 + Ga0059261_0550 0.35 -1.1
564,972 + Ga0059261_0550 0.35 -0.5
564,973 - Ga0059261_0550 0.35 -0.2
564,973 - Ga0059261_0550 0.35 -0.4
564,973 - Ga0059261_0550 0.35 -0.3
564,996 + Ga0059261_0550 0.37 -0.9
564,996 + Ga0059261_0550 0.37 -1.5
564,996 + Ga0059261_0550 0.37 -1.4
564,996 + Ga0059261_0550 0.37 -0.4
564,996 + Ga0059261_0550 0.37 -0.3
564,996 + Ga0059261_0550 0.37 -1.9
564,997 - Ga0059261_0550 0.38 -0.6
564,997 - Ga0059261_0550 0.38 -0.8
564,997 - Ga0059261_0550 0.38 -0.9
564,997 - Ga0059261_0550 0.38 -1.2
564,997 - Ga0059261_0550 0.38 +0.9
564,997 - Ga0059261_0550 0.38 -1.2
564,998 + -0.6
564,999 - Ga0059261_0550 0.38 -1.5
564,999 - Ga0059261_0550 0.38 -0.3
565,112 - Ga0059261_0550 0.50 -0.6
565,461 + Ga0059261_0550 0.88 -0.2
565,461 + Ga0059261_0550 0.88 -1.4
565,461 + Ga0059261_0550 0.88 -1.2
565,462 - Ga0059261_0550 0.88 -1.3
565,462 - Ga0059261_0550 0.88 -2.6
565,598 + -1.2
565,598 + -0.4
565,598 + -1.2
565,598 + -0.6
565,599 - -0.5
565,599 - -1.0
565,742 + Ga0059261_0551 0.44 -0.5
565,742 + Ga0059261_0551 0.44 -0.5
565,743 - Ga0059261_0551 0.44 -1.3
565,779 + Ga0059261_0551 0.54 -0.2
566,172 + Ga0059261_0552 0.15 -1.4
566,172 + Ga0059261_0552 0.15 -0.9
566,176 + Ga0059261_0552 0.15 -1.1
566,176 + Ga0059261_0552 0.15 -1.6
566,176 + Ga0059261_0552 0.15 -0.0
566,177 - Ga0059261_0552 0.15 -0.3
566,177 - Ga0059261_0552 0.15 +0.8
566,177 - -1.1
566,177 - Ga0059261_0552 0.15 +0.4
566,177 - -1.3
566,196 + Ga0059261_0552 0.17 -0.5

Or see this region's nucleotide sequence