Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0236

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0234 and Ga0059261_0235 are separated by 7 nucleotidesGa0059261_0235 and Ga0059261_0236 are separated by 72 nucleotidesGa0059261_0236 and Ga0059261_0237 are separated by 84 nucleotidesGa0059261_0237 and Ga0059261_0238 are separated by 44 nucleotides Ga0059261_0234: Ga0059261_0234 - orotidine-5'-phosphate decarboxylase (EC 4.1.1.23), at 224,609 to 225,283 _0234 Ga0059261_0235: Ga0059261_0235 - Acetyltransferases, at 225,291 to 225,794 _0235 Ga0059261_0236: Ga0059261_0236 - Leucyl aminopeptidase, at 225,867 to 227,426 _0236 Ga0059261_0237: Ga0059261_0237 - phosphoribosylanthranilate isomerase (EC 5.3.1.24), at 227,511 to 228,149 _0237 Ga0059261_0238: Ga0059261_0238 - tryptophan synthase, beta subunit, at 228,194 to 229,405 _0238 Position (kb) 225 226 227 228Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 225.313 kb on + strandat 225.314 kb on - strandat 225.314 kb on - strandat 225.420 kb on - strand, within Ga0059261_0235at 225.511 kb on + strand, within Ga0059261_0235at 225.511 kb on + strand, within Ga0059261_0235at 225.512 kb on - strand, within Ga0059261_0235at 225.512 kb on - strand, within Ga0059261_0235at 225.512 kb on - strand, within Ga0059261_0235at 225.512 kb on - strand, within Ga0059261_0235at 225.537 kb on + strand, within Ga0059261_0235at 225.538 kb on - strand, within Ga0059261_0235at 225.538 kb on - strand, within Ga0059261_0235at 225.538 kb on - strand, within Ga0059261_0235at 225.690 kb on + strand, within Ga0059261_0235at 225.690 kb on + strand, within Ga0059261_0235at 225.690 kb on + strand, within Ga0059261_0235at 225.690 kb on + strand, within Ga0059261_0235at 225.690 kb on + strand, within Ga0059261_0235at 225.691 kb on - strand, within Ga0059261_0235at 225.691 kb on - strand, within Ga0059261_0235at 225.691 kb on - strand, within Ga0059261_0235at 225.839 kb on - strandat 225.893 kb on + strandat 225.894 kb on - strandat 226.161 kb on + strand, within Ga0059261_0236at 226.162 kb on - strand, within Ga0059261_0236at 226.434 kb on + strand, within Ga0059261_0236at 226.434 kb on + strand, within Ga0059261_0236at 226.434 kb on + strand, within Ga0059261_0236at 226.434 kb on + strand, within Ga0059261_0236at 226.434 kb on + strand, within Ga0059261_0236at 226.434 kb on + strand, within Ga0059261_0236at 226.434 kb on + strand, within Ga0059261_0236at 226.434 kb on + strand, within Ga0059261_0236at 226.434 kb on + strand, within Ga0059261_0236at 226.434 kb on + strand, within Ga0059261_0236at 226.434 kb on + strand, within Ga0059261_0236at 226.435 kb on - strand, within Ga0059261_0236at 226.435 kb on - strand, within Ga0059261_0236at 226.435 kb on - strand, within Ga0059261_0236at 226.435 kb on - strand, within Ga0059261_0236at 226.435 kb on - strand, within Ga0059261_0236at 226.435 kb on - strand, within Ga0059261_0236at 226.435 kb on - strand, within Ga0059261_0236at 226.674 kb on + strand, within Ga0059261_0236at 226.674 kb on + strand, within Ga0059261_0236at 226.674 kb on + strand, within Ga0059261_0236at 226.675 kb on - strand, within Ga0059261_0236at 226.675 kb on - strand, within Ga0059261_0236at 226.675 kb on - strand, within Ga0059261_0236at 226.676 kb on + strand, within Ga0059261_0236at 226.676 kb on + strand, within Ga0059261_0236at 226.676 kb on + strand, within Ga0059261_0236at 226.677 kb on - strand, within Ga0059261_0236at 226.677 kb on - strand, within Ga0059261_0236at 226.677 kb on - strand, within Ga0059261_0236at 226.677 kb on - strand, within Ga0059261_0236at 226.854 kb on - strand, within Ga0059261_0236at 227.001 kb on + strand, within Ga0059261_0236at 227.001 kb on + strand, within Ga0059261_0236at 227.001 kb on + strand, within Ga0059261_0236at 227.016 kb on + strand, within Ga0059261_0236at 227.016 kb on + strand, within Ga0059261_0236at 227.017 kb on - strand, within Ga0059261_0236at 227.085 kb on + strand, within Ga0059261_0236at 227.085 kb on + strand, within Ga0059261_0236at 227.086 kb on - strand, within Ga0059261_0236at 227.086 kb on - strand, within Ga0059261_0236at 227.086 kb on - strand, within Ga0059261_0236at 227.086 kb on - strand, within Ga0059261_0236at 227.086 kb on - strand, within Ga0059261_0236at 227.086 kb on - strand, within Ga0059261_0236at 227.187 kb on + strand, within Ga0059261_0236at 227.187 kb on + strand, within Ga0059261_0236at 227.187 kb on + strand, within Ga0059261_0236at 227.312 kb on + strandat 227.312 kb on + strandat 227.312 kb on + strandat 227.313 kb on - strandat 227.415 kb on + strandat 227.424 kb on + strandat 227.424 kb on + strandat 227.424 kb on + strandat 227.562 kb on - strandat 227.896 kb on - strand, within Ga0059261_0237at 227.944 kb on + strand, within Ga0059261_0237at 227.944 kb on + strand, within Ga0059261_0237at 227.944 kb on + strand, within Ga0059261_0237at 227.944 kb on + strand, within Ga0059261_0237at 227.945 kb on - strand, within Ga0059261_0237at 227.945 kb on - strand, within Ga0059261_0237at 227.945 kb on - strand, within Ga0059261_0237at 228.147 kb on + strandat 228.147 kb on + strandat 228.147 kb on + strandat 228.147 kb on + strandat 228.147 kb on + strandat 228.147 kb on + strandat 228.192 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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225,313 + +0.3
225,314 - -0.4
225,314 - +0.3
225,420 - Ga0059261_0235 0.26 -0.6
225,511 + Ga0059261_0235 0.44 -0.1
225,511 + Ga0059261_0235 0.44 -0.3
225,512 - Ga0059261_0235 0.44 +0.2
225,512 - Ga0059261_0235 0.44 -0.6
225,512 - Ga0059261_0235 0.44 +0.2
225,512 - Ga0059261_0235 0.44 +0.3
225,537 + Ga0059261_0235 0.49 +0.4
225,538 - Ga0059261_0235 0.49 +0.1
225,538 - Ga0059261_0235 0.49 +0.1
225,538 - Ga0059261_0235 0.49 +0.3
225,690 + Ga0059261_0235 0.79 -0.3
225,690 + Ga0059261_0235 0.79 -0.5
225,690 + Ga0059261_0235 0.79 +0.4
225,690 + Ga0059261_0235 0.79 +0.5
225,690 + Ga0059261_0235 0.79 -1.1
225,691 - Ga0059261_0235 0.79 -0.3
225,691 - Ga0059261_0235 0.79 -1.5
225,691 - Ga0059261_0235 0.79 -1.1
225,839 - -0.2
225,893 + +0.3
225,894 - -1.0
226,161 + Ga0059261_0236 0.19 +0.7
226,162 - Ga0059261_0236 0.19 +1.0
226,434 + Ga0059261_0236 0.36 +0.7
226,434 + Ga0059261_0236 0.36 +0.1
226,434 + Ga0059261_0236 0.36 -0.7
226,434 + Ga0059261_0236 0.36 +0.2
226,434 + Ga0059261_0236 0.36 -0.3
226,434 + Ga0059261_0236 0.36 +0.5
226,434 + Ga0059261_0236 0.36 -0.5
226,434 + Ga0059261_0236 0.36 +0.7
226,434 + Ga0059261_0236 0.36 +1.5
226,434 + Ga0059261_0236 0.36 -0.2
226,434 + Ga0059261_0236 0.36 +1.3
226,435 - Ga0059261_0236 0.36 -1.5
226,435 - Ga0059261_0236 0.36 +0.3
226,435 - Ga0059261_0236 0.36 +1.0
226,435 - Ga0059261_0236 0.36 +0.3
226,435 - Ga0059261_0236 0.36 +0.0
226,435 - Ga0059261_0236 0.36 +0.1
226,435 - Ga0059261_0236 0.36 -0.5
226,674 + Ga0059261_0236 0.52 +0.6
226,674 + Ga0059261_0236 0.52 -0.8
226,674 + Ga0059261_0236 0.52 -1.2
226,675 - Ga0059261_0236 0.52 -0.1
226,675 - Ga0059261_0236 0.52 +0.3
226,675 - Ga0059261_0236 0.52 -0.1
226,676 + Ga0059261_0236 0.52 -0.4
226,676 + Ga0059261_0236 0.52 +0.2
226,676 + Ga0059261_0236 0.52 +0.2
226,677 - Ga0059261_0236 0.52 -1.1
226,677 - Ga0059261_0236 0.52 +0.8
226,677 - Ga0059261_0236 0.52 -0.9
226,677 - Ga0059261_0236 0.52 -0.2
226,854 - Ga0059261_0236 0.63 +0.4
227,001 + Ga0059261_0236 0.73 -0.3
227,001 + Ga0059261_0236 0.73 -0.3
227,001 + Ga0059261_0236 0.73 +0.0
227,016 + Ga0059261_0236 0.74 -0.1
227,016 + Ga0059261_0236 0.74 +0.2
227,017 - Ga0059261_0236 0.74 +0.3
227,085 + Ga0059261_0236 0.78 -0.8
227,085 + Ga0059261_0236 0.78 +0.2
227,086 - Ga0059261_0236 0.78 +0.8
227,086 - Ga0059261_0236 0.78 -1.2
227,086 - Ga0059261_0236 0.78 -0.6
227,086 - Ga0059261_0236 0.78 +0.1
227,086 - Ga0059261_0236 0.78 -0.3
227,086 - Ga0059261_0236 0.78 -0.9
227,187 + Ga0059261_0236 0.85 +0.5
227,187 + Ga0059261_0236 0.85 -0.6
227,187 + Ga0059261_0236 0.85 +0.1
227,312 + -0.6
227,312 + +0.6
227,312 + +0.1
227,313 - -0.2
227,415 + +0.0
227,424 + -0.3
227,424 + +0.1
227,424 + +0.7
227,562 - -2.1
227,896 - Ga0059261_0237 0.60 -4.8
227,944 + Ga0059261_0237 0.68 -0.8
227,944 + Ga0059261_0237 0.68 -3.1
227,944 + Ga0059261_0237 0.68 -3.7
227,944 + Ga0059261_0237 0.68 -2.9
227,945 - Ga0059261_0237 0.68 -2.3
227,945 - Ga0059261_0237 0.68 -3.1
227,945 - Ga0059261_0237 0.68 -1.8
228,147 + +0.1
228,147 + -0.1
228,147 + +0.7
228,147 + -0.8
228,147 + +0.6
228,147 + +0.5
228,192 + -0.1

Or see this region's nucleotide sequence