Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01900

Experiment: PYE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01899 and CCNA_01900 overlap by 4 nucleotidesCCNA_01900 and CCNA_01901 are separated by 107 nucleotides CCNA_01899: CCNA_01899 - DNA polymerase III, delta, at 2,041,635 to 2,042,645 _01899 CCNA_01900: CCNA_01900 - thymidylate kinase, at 2,042,642 to 2,043,268 _01900 CCNA_01901: CCNA_01901 - lipoprotein, at 2,043,376 to 2,044,365 _01901 Position (kb) 2042 2043 2044Strain fitness (log2 ratio) -2 -1 0 1at 2041.653 kb on - strandat 2041.678 kb on + strandat 2041.678 kb on + strandat 2043.390 kb on - strandat 2043.396 kb on + strandat 2043.406 kb on + strandat 2043.433 kb on + strandat 2043.434 kb on - strandat 2043.434 kb on - strandat 2043.434 kb on - strandat 2043.515 kb on - strand, within CCNA_01901at 2043.588 kb on + strand, within CCNA_01901at 2043.591 kb on - strand, within CCNA_01901at 2043.619 kb on - strand, within CCNA_01901at 2043.644 kb on + strand, within CCNA_01901at 2043.670 kb on + strand, within CCNA_01901at 2043.670 kb on + strand, within CCNA_01901at 2043.678 kb on - strand, within CCNA_01901at 2043.708 kb on - strand, within CCNA_01901at 2043.732 kb on + strand, within CCNA_01901at 2043.732 kb on + strand, within CCNA_01901at 2043.760 kb on - strand, within CCNA_01901at 2043.760 kb on - strand, within CCNA_01901at 2043.760 kb on - strand, within CCNA_01901at 2043.760 kb on - strand, within CCNA_01901at 2043.866 kb on + strand, within CCNA_01901at 2043.899 kb on + strand, within CCNA_01901at 2043.899 kb on + strand, within CCNA_01901at 2043.907 kb on - strand, within CCNA_01901at 2043.907 kb on - strand, within CCNA_01901at 2043.907 kb on - strand, within CCNA_01901at 2043.907 kb on - strand, within CCNA_01901at 2043.907 kb on - strand, within CCNA_01901at 2043.907 kb on - strand, within CCNA_01901at 2043.938 kb on - strand, within CCNA_01901at 2043.993 kb on + strand, within CCNA_01901at 2044.006 kb on - strand, within CCNA_01901at 2044.123 kb on - strand, within CCNA_01901at 2044.173 kb on + strand, within CCNA_01901at 2044.206 kb on + strand, within CCNA_01901

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE
remove
2,041,653 - -1.2
2,041,678 + -0.7
2,041,678 + -0.2
2,043,390 - -0.3
2,043,396 + -1.6
2,043,406 + -1.6
2,043,433 + -0.5
2,043,434 - +0.9
2,043,434 - -0.5
2,043,434 - +0.9
2,043,515 - CCNA_01901 0.14 -1.8
2,043,588 + CCNA_01901 0.21 -1.7
2,043,591 - CCNA_01901 0.22 -0.6
2,043,619 - CCNA_01901 0.25 -0.5
2,043,644 + CCNA_01901 0.27 +1.2
2,043,670 + CCNA_01901 0.30 -1.0
2,043,670 + CCNA_01901 0.30 -2.0
2,043,678 - CCNA_01901 0.31 -1.9
2,043,708 - CCNA_01901 0.34 -0.7
2,043,732 + CCNA_01901 0.36 -0.8
2,043,732 + CCNA_01901 0.36 +0.3
2,043,760 - CCNA_01901 0.39 +0.5
2,043,760 - CCNA_01901 0.39 -1.3
2,043,760 - CCNA_01901 0.39 +0.1
2,043,760 - CCNA_01901 0.39 -0.8
2,043,866 + CCNA_01901 0.49 +0.4
2,043,899 + CCNA_01901 0.53 -2.2
2,043,899 + CCNA_01901 0.53 -1.6
2,043,907 - CCNA_01901 0.54 +0.1
2,043,907 - CCNA_01901 0.54 -0.8
2,043,907 - CCNA_01901 0.54 +1.0
2,043,907 - CCNA_01901 0.54 +0.5
2,043,907 - CCNA_01901 0.54 +1.0
2,043,907 - CCNA_01901 0.54 +0.6
2,043,938 - CCNA_01901 0.57 -2.0
2,043,993 + CCNA_01901 0.62 -0.2
2,044,006 - CCNA_01901 0.64 -0.9
2,044,123 - CCNA_01901 0.75 -0.1
2,044,173 + CCNA_01901 0.81 -1.4
2,044,206 + CCNA_01901 0.84 -0.7

Or see this region's nucleotide sequence