Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01852

Experiment: PYE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE
1,983,053	-		CCNA_01851	0.31	+1.6
1,983,105	-		CCNA_01851	0.36	+1.6
1,983,119	-		CCNA_01851	0.38	+1.5
1,983,119	-		CCNA_01851	0.38	+1.9
1,983,160	-		CCNA_01851	0.41	+1.5
1,983,187	+		CCNA_01851	0.44	+0.7
1,983,192	+		CCNA_01851	0.44	-0.6
1,983,200	-		CCNA_01851	0.45	+1.7
1,983,200	-		CCNA_01851	0.45	+1.7
1,983,200	-		CCNA_01851	0.45	+2.1
1,983,200	-		CCNA_01851	0.45	+3.0
1,983,200	-		CCNA_01851	0.45	+1.8
1,983,200	-		CCNA_01851	0.45	+1.5
1,983,200	-		CCNA_01851	0.45	+1.8
1,983,200	-		CCNA_01851	0.45	+2.8
1,983,200	-		CCNA_01851	0.45	+1.9
1,983,268	-		CCNA_01851	0.52	+1.7
1,983,308	+		CCNA_01851	0.55	-1.6
1,983,424	+		CCNA_01851	0.66	-1.1
1,983,431	-		CCNA_01851	0.67	+1.4
1,983,441	-		CCNA_01851	0.68	+0.6
1,983,451	-		CCNA_01851	0.69	+1.3
1,983,476	+		CCNA_01851	0.71	-0.3
1,983,510	-		CCNA_01851	0.74	+1.2
1,983,581	-		CCNA_01851	0.81	+1.6
1,983,592	-		CCNA_01851	0.82	+0.9
1,983,625	-		CCNA_01851	0.85	+1.3
1,983,660	-		CCNA_01851	0.89	+1.2
1,983,757	+				-0.7
1,983,780	-				+0.6
1,983,826	+				-1.2
1,983,838	-				+0.4
1,983,844	-				-1.2
1,983,850	+				+0.0
1,983,880	+				-0.7
1,983,978	+				+0.3
1,983,978	+				-0.5
1,983,983	+				-0.0
1,983,986	-				+1.2
1,983,991	-				-1.2
1,984,012	+				-0.6
1,984,012	+				-0.2
1,984,012	+				+0.3
1,984,020	-				-1.3
1,984,025	+				+0.7
1,984,056	+				+0.2
1,984,060	+				-0.9
1,984,060	+				-1.4
1,984,075	-				-2.7
1,984,154	+		CCNA_01852	0.12	-1.3
1,984,154	+				+2.3
1,984,159	+		CCNA_01852	0.12	-1.0
1,984,203	+		CCNA_01852	0.16	-1.5
1,984,203	+		CCNA_01852	0.16	+0.0
1,984,211	-		CCNA_01852	0.16	-0.8
1,984,215	+		CCNA_01852	0.17	+0.0
1,984,215	+		CCNA_01852	0.17	-1.1
1,984,215	+		CCNA_01852	0.17	-1.1
1,984,215	+		CCNA_01852	0.17	+0.2
1,984,223	-		CCNA_01852	0.17	-0.6
1,984,223	-		CCNA_01852	0.17	-0.4
1,984,223	-		CCNA_01852	0.17	-2.0
1,984,223	-		CCNA_01852	0.17	-1.0
1,984,262	+		CCNA_01852	0.20	-3.0
1,984,283	-				+0.7
1,984,285	+		CCNA_01852	0.22	-0.3
1,984,293	-		CCNA_01852	0.22	-2.0
1,984,293	-		CCNA_01852	0.22	-0.3
1,984,299	+		CCNA_01852	0.23	-2.1
1,984,299	+		CCNA_01852	0.23	-1.4
1,984,307	-		CCNA_01852	0.23	+0.6
1,984,311	+		CCNA_01852	0.24	+0.4
1,984,314	-		CCNA_01852	0.24	-0.6
1,984,343	+		CCNA_01852	0.26	-1.5
1,984,360	+		CCNA_01852	0.27	-1.7
1,984,380	+		CCNA_01852	0.29	-2.5
1,984,424	+		CCNA_01852	0.32	-1.1
1,984,427	-		CCNA_01852	0.32	+0.5
1,984,432	-		CCNA_01852	0.33	-0.4
1,984,451	+		CCNA_01852	0.34	-0.1
1,984,451	+		CCNA_01852	0.34	-0.4
1,984,486	+		CCNA_01852	0.37	-0.5
1,984,607	+		CCNA_01852	0.46	+0.9
1,984,690	+		CCNA_01852	0.52	-0.3
1,984,766	+		CCNA_01852	0.58	-2.1
1,984,805	+		CCNA_01852	0.61	-0.8
1,984,834	+		CCNA_01852	0.63	-0.9
1,984,834	+		CCNA_01852	0.63	-2.4
1,984,834	+		CCNA_01852	0.63	+0.6
1,984,834	+		CCNA_01852	0.63	-0.9
1,984,842	-		CCNA_01852	0.63	-1.4
1,984,842	-		CCNA_01852	0.63	+0.1
1,984,842	-		CCNA_01852	0.63	-2.0
1,984,842	-		CCNA_01852	0.63	-1.9
1,984,868	+		CCNA_01852	0.65	-1.1
1,984,884	+		CCNA_01852	0.67	-0.6
1,984,884	+		CCNA_01852	0.67	-0.1
1,984,892	-		CCNA_01852	0.67	-0.9
1,984,894	+		CCNA_01852	0.67	+0.6
1,984,894	+		CCNA_01852	0.67	-1.1
1,984,894	+		CCNA_01852	0.67	-0.8
1,984,958	-		CCNA_01852	0.72	+0.2
1,984,999	+		CCNA_01852	0.75	-1.8
1,985,004	+		CCNA_01852	0.75	-0.9
1,985,007	-		CCNA_01852	0.76	+1.4
1,985,042	+		CCNA_01852	0.78	+1.4
1,985,113	+		CCNA_01852	0.84	+0.2
1,985,113	+		CCNA_01852	0.84	-2.5
1,985,123	-		CCNA_01852	0.84	+0.4
1,985,131	+		CCNA_01852	0.85	+0.9
1,985,132	+		CCNA_01852	0.85	-2.5
1,985,137	+		CCNA_01852	0.85	+0.8
1,985,142	+		CCNA_01852	0.86	-0.0
1,985,146	-		CCNA_01852	0.86	-0.8
1,985,153	+		CCNA_01852	0.87	+0.3
1,985,161	-		CCNA_01852	0.87	-1.9
1,985,197	-		CCNA_01852	0.90	+0.7
1,985,198	-		CCNA_01852	0.90	-1.5
1,985,211	-				-2.1
1,985,224	+				+0.7
1,985,227	-				+0.0
1,985,246	+				-0.4
1,985,326	+				-1.4
1,985,326	+				+0.1
1,985,334	-				-0.3
1,985,334	-				-1.4
1,985,338	+				+0.9
1,985,397	+				+0.9
1,985,419	-				+0.2
1,985,422	+				-0.9
1,985,430	-				+0.7
1,985,528	+		CCNA_01853	0.25	-0.3
1,985,536	-		CCNA_01853	0.27	-2.4
1,985,605	-		CCNA_01853	0.44	-1.5
1,985,608	+		CCNA_01853	0.45	-1.8
1,985,616	-		CCNA_01853	0.47	-0.1
1,985,646	+		CCNA_01853	0.55	+2.2
1,985,646	+		CCNA_01853	0.55	+0.9
1,985,699	+		CCNA_01853	0.68	-0.7
1,985,707	-		CCNA_01853	0.70	-2.2
1,985,720	+		CCNA_01853	0.73	+0.1
1,985,725	+		CCNA_01853	0.74	+0.1
1,985,744	+				+1.2
1,985,766	+		CCNA_01853	0.84	+1.0
1,985,766	+		CCNA_01853	0.84	+1.5
1,985,768	+		CCNA_01853	0.85	+1.3
1,985,870	+				+0.2
1,985,870	+				+0.6
1,985,884	+				+0.8
1,985,897	-				-0.7
1,985,922	-				-0.4
1,985,922	-				+0.1
1,985,922	-				-0.3
1,985,938	+				+0.4
1,985,946	-				+0.4
1,985,946	-				+0.0
1,985,976	+				-1.6
1,985,986	+				-0.6
1,985,994	-				-0.1
1,986,061	+				+0.2
1,986,061	+		CCNA_01854	0.13	+0.4
1,986,083	+		CCNA_01854	0.16	-0.3
1,986,146	-		CCNA_01854	0.26	-1.6
1,986,206	+		CCNA_01854	0.35	-1.2
1,986,223	-		CCNA_01854	0.37	-2.3
1,986,265	+		CCNA_01854	0.44	-0.2
1,986,273	-		CCNA_01854	0.45	-1.1
1,986,277	+		CCNA_01854	0.45	-0.7
1,986,284	-		CCNA_01854	0.47	-0.6
1,986,285	-		CCNA_01854	0.47	+0.2