Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22485

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22480 and BPHYT_RS22485 are separated by 16 nucleotidesBPHYT_RS22485 and BPHYT_RS22490 are separated by 233 nucleotides BPHYT_RS22480: BPHYT_RS22480 - cytochrome C551, at 602,492 to 603,397 _RS22480 BPHYT_RS22485: BPHYT_RS22485 - NADP-dependent aryl-alcohol dehydrogenase, at 603,414 to 604,394 _RS22485 BPHYT_RS22490: BPHYT_RS22490 - hypothetical protein, at 604,628 to 605,701 _RS22490 Position (kb) 603 604 605Strain fitness (log2 ratio) -3 -2 -1 0 1at 602.777 kb on + strand, within BPHYT_RS22480at 602.778 kb on - strand, within BPHYT_RS22480at 602.819 kb on + strand, within BPHYT_RS22480at 603.229 kb on + strand, within BPHYT_RS22480at 603.445 kb on + strandat 603.821 kb on - strand, within BPHYT_RS22485at 603.822 kb on + strand, within BPHYT_RS22485at 603.823 kb on - strand, within BPHYT_RS22485at 603.911 kb on - strand, within BPHYT_RS22485at 603.932 kb on - strand, within BPHYT_RS22485at 603.952 kb on - strand, within BPHYT_RS22485at 604.387 kb on + strandat 604.561 kb on + strandat 604.564 kb on - strandat 604.564 kb on - strandat 604.893 kb on + strand, within BPHYT_RS22490at 604.894 kb on - strand, within BPHYT_RS22490at 604.894 kb on - strand, within BPHYT_RS22490at 604.986 kb on - strand, within BPHYT_RS22490at 605.285 kb on + strand, within BPHYT_RS22490at 605.285 kb on + strand, within BPHYT_RS22490at 605.286 kb on - strand, within BPHYT_RS22490

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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602,777 + BPHYT_RS22480 0.31 -0.5
602,778 - BPHYT_RS22480 0.32 -0.1
602,819 + BPHYT_RS22480 0.36 +0.1
603,229 + BPHYT_RS22480 0.81 -3.2
603,445 + +0.6
603,821 - BPHYT_RS22485 0.41 -0.3
603,822 + BPHYT_RS22485 0.42 -0.8
603,823 - BPHYT_RS22485 0.42 -1.8
603,911 - BPHYT_RS22485 0.51 -2.5
603,932 - BPHYT_RS22485 0.53 -1.0
603,952 - BPHYT_RS22485 0.55 -2.6
604,387 + -0.8
604,561 + -0.8
604,564 - +0.3
604,564 - -0.9
604,893 + BPHYT_RS22490 0.25 -0.1
604,894 - BPHYT_RS22490 0.25 -0.6
604,894 - BPHYT_RS22490 0.25 +0.0
604,986 - BPHYT_RS22490 0.33 -0.1
605,285 + BPHYT_RS22490 0.61 +0.7
605,285 + BPHYT_RS22490 0.61 +0.5
605,286 - BPHYT_RS22490 0.61 +0.5

Or see this region's nucleotide sequence