Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18650 and BPHYT_RS18655 are separated by 71 nucleotides BPHYT_RS18655 and BPHYT_RS18660 are separated by 39 nucleotides BPHYT_RS18660 and BPHYT_RS18665 are separated by 200 nucleotides
BPHYT_RS18650: BPHYT_RS18650 - hypothetical protein, at 4,193,821 to 4,195,629
_RS18650
BPHYT_RS18655: BPHYT_RS18655 - 3-oxoacyl-ACP synthase, at 4,195,701 to 4,195,958
_RS18655
BPHYT_RS18660: BPHYT_RS18660 - hypothetical protein, at 4,195,998 to 4,196,276
_RS18660
BPHYT_RS18665: BPHYT_RS18665 - GumN family protein, at 4,196,477 to 4,197,640
_RS18665
Position (kb) 4195
4196
4197 Strain fitness (log2 ratio) -1
0
1
2 at 4195.105 kb on + strand, within BPHYT_RS18650 at 4195.106 kb on - strand, within BPHYT_RS18650 at 4195.106 kb on - strand, within BPHYT_RS18650 at 4195.286 kb on - strand, within BPHYT_RS18650 at 4195.535 kb on - strand at 4195.568 kb on + strand at 4195.568 kb on + strand at 4195.569 kb on - strand at 4195.569 kb on - strand at 4195.627 kb on + strand at 4195.627 kb on + strand at 4195.628 kb on - strand at 4195.628 kb on - strand at 4195.731 kb on - strand, within BPHYT_RS18655 at 4195.731 kb on - strand, within BPHYT_RS18655 at 4195.731 kb on - strand, within BPHYT_RS18655 at 4195.733 kb on - strand, within BPHYT_RS18655 at 4196.181 kb on + strand, within BPHYT_RS18660 at 4196.182 kb on - strand, within BPHYT_RS18660 at 4196.204 kb on + strand, within BPHYT_RS18660 at 4196.310 kb on + strand at 4196.329 kb on - strand at 4196.360 kb on + strand at 4196.360 kb on + strand at 4196.360 kb on + strand at 4196.360 kb on + strand at 4196.360 kb on + strand at 4196.361 kb on - strand at 4196.361 kb on - strand at 4196.366 kb on + strand at 4196.367 kb on - strand at 4196.367 kb on - strand at 4196.444 kb on - strand at 4196.444 kb on - strand at 4196.447 kb on + strand at 4196.448 kb on - strand at 4196.448 kb on - strand at 4196.448 kb on - strand at 4196.628 kb on + strand, within BPHYT_RS18665 at 4196.628 kb on + strand, within BPHYT_RS18665 at 4196.629 kb on - strand, within BPHYT_RS18665 at 4196.629 kb on - strand, within BPHYT_RS18665 at 4196.895 kb on + strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4196.896 kb on - strand, within BPHYT_RS18665 at 4197.105 kb on + strand, within BPHYT_RS18665 at 4197.105 kb on + strand, within BPHYT_RS18665 at 4197.262 kb on - strand, within BPHYT_RS18665 at 4197.262 kb on - strand, within BPHYT_RS18665
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 4,195,105 + BPHYT_RS18650 0.71 -0.4 4,195,106 - BPHYT_RS18650 0.71 -0.2 4,195,106 - BPHYT_RS18650 0.71 +0.3 4,195,286 - BPHYT_RS18650 0.81 +0.1 4,195,535 - -0.5 4,195,568 + -0.1 4,195,568 + -0.3 4,195,569 - -1.6 4,195,569 - +0.3 4,195,627 + -1.0 4,195,627 + -0.6 4,195,628 - -0.2 4,195,628 - +1.5 4,195,731 - BPHYT_RS18655 0.12 +0.5 4,195,731 - BPHYT_RS18655 0.12 -0.7 4,195,731 - BPHYT_RS18655 0.12 -0.8 4,195,733 - BPHYT_RS18655 0.12 -0.2 4,196,181 + BPHYT_RS18660 0.66 -0.2 4,196,182 - BPHYT_RS18660 0.66 -1.6 4,196,204 + BPHYT_RS18660 0.74 -0.8 4,196,310 + -0.2 4,196,329 - -0.5 4,196,360 + -0.4 4,196,360 + +0.1 4,196,360 + +0.2 4,196,360 + -0.6 4,196,360 + -0.3 4,196,361 - -0.7 4,196,361 - +2.0 4,196,366 + +0.1 4,196,367 - +0.2 4,196,367 - +0.2 4,196,444 - +0.3 4,196,444 - +0.5 4,196,447 + -0.2 4,196,448 - -0.1 4,196,448 - -0.3 4,196,448 - +0.7 4,196,628 + BPHYT_RS18665 0.13 -0.1 4,196,628 + BPHYT_RS18665 0.13 +0.6 4,196,629 - BPHYT_RS18665 0.13 +0.0 4,196,629 - BPHYT_RS18665 0.13 -0.0 4,196,895 + BPHYT_RS18665 0.36 +1.0 4,196,896 - BPHYT_RS18665 0.36 +0.0 4,196,896 - BPHYT_RS18665 0.36 +0.4 4,196,896 - BPHYT_RS18665 0.36 -0.6 4,196,896 - BPHYT_RS18665 0.36 -0.7 4,197,105 + BPHYT_RS18665 0.54 -0.9 4,197,105 + BPHYT_RS18665 0.54 +0.7 4,197,262 - BPHYT_RS18665 0.67 +0.9 4,197,262 - BPHYT_RS18665 0.67 -0.7
Or see this region's nucleotide sequence