Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11485

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11480 and BPHYT_RS11485 are separated by 83 nucleotidesBPHYT_RS11485 and BPHYT_RS11490 are separated by 171 nucleotidesBPHYT_RS11490 and BPHYT_RS11495 are separated by 133 nucleotides BPHYT_RS11480: BPHYT_RS11480 - heme ABC transporter ATP-binding protein, at 2,610,633 to 2,612,225 _RS11480 BPHYT_RS11485: BPHYT_RS11485 - 6-phosphogluconate dehydrogenase, at 2,612,309 to 2,613,376 _RS11485 BPHYT_RS11490: BPHYT_RS11490 - hypothetical protein, at 2,613,548 to 2,613,754 _RS11490 BPHYT_RS11495: BPHYT_RS11495 - membrane protein, at 2,613,888 to 2,614,994 _RS11495 Position (kb) 2612 2613 2614Strain fitness (log2 ratio) -1 0 1 2at 2611.507 kb on + strand, within BPHYT_RS11480at 2611.529 kb on - strand, within BPHYT_RS11480at 2612.169 kb on - strandat 2612.169 kb on - strandat 2612.208 kb on - strandat 2612.948 kb on + strand, within BPHYT_RS11485at 2613.167 kb on + strand, within BPHYT_RS11485at 2613.443 kb on + strandat 2613.509 kb on + strandat 2613.563 kb on + strandat 2613.563 kb on + strandat 2613.922 kb on + strandat 2613.923 kb on - strandat 2613.923 kb on - strandat 2614.193 kb on - strand, within BPHYT_RS11495at 2614.193 kb on - strand, within BPHYT_RS11495

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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2,611,507 + BPHYT_RS11480 0.55 -0.4
2,611,529 - BPHYT_RS11480 0.56 -0.4
2,612,169 - -0.1
2,612,169 - +0.6
2,612,208 - +0.2
2,612,948 + BPHYT_RS11485 0.60 +0.7
2,613,167 + BPHYT_RS11485 0.80 +0.4
2,613,443 + +0.4
2,613,509 + -0.2
2,613,563 + -1.3
2,613,563 + +1.8
2,613,922 + -0.1
2,613,923 - -0.0
2,613,923 - -0.7
2,614,193 - BPHYT_RS11495 0.28 -0.6
2,614,193 - BPHYT_RS11495 0.28 -0.9

Or see this region's nucleotide sequence