Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_932

Experiment: sodium fluoride 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_931 and Ac3H11_932 are separated by 133 nucleotidesAc3H11_932 and Ac3H11_933 are separated by 9 nucleotides Ac3H11_931 - Phytoene synthase (EC 2.5.1.32), at 45,667 to 46,611 _931 Ac3H11_932 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 46,745 to 47,980 _932 Ac3H11_933 - Probable transmembrane drug efflux protein, at 47,990 to 51,172 _933 Position (kb) 46 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 46.674 kb on + strandat 46.976 kb on + strand, within Ac3H11_932at 47.111 kb on + strand, within Ac3H11_932at 47.111 kb on + strand, within Ac3H11_932at 47.111 kb on + strand, within Ac3H11_932at 47.111 kb on + strand, within Ac3H11_932at 47.112 kb on - strand, within Ac3H11_932at 47.112 kb on - strand, within Ac3H11_932at 47.327 kb on + strand, within Ac3H11_932at 47.327 kb on + strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932at 47.642 kb on + strand, within Ac3H11_932at 47.643 kb on - strand, within Ac3H11_932at 47.643 kb on - strand, within Ac3H11_932at 47.643 kb on - strand, within Ac3H11_932at 47.643 kb on - strand, within Ac3H11_932at 47.643 kb on - strand, within Ac3H11_932at 47.741 kb on + strand, within Ac3H11_932at 47.741 kb on + strand, within Ac3H11_932at 47.741 kb on + strand, within Ac3H11_932at 47.742 kb on - strand, within Ac3H11_932at 47.742 kb on - strand, within Ac3H11_932at 47.742 kb on - strand, within Ac3H11_932at 47.742 kb on - strand, within Ac3H11_932at 47.894 kb on + strandat 47.895 kb on - strandat 48.063 kb on - strandat 48.063 kb on - strandat 48.063 kb on - strandat 48.101 kb on + strandat 48.102 kb on - strandat 48.164 kb on + strandat 48.164 kb on + strandat 48.164 kb on + strandat 48.164 kb on + strandat 48.164 kb on + strandat 48.165 kb on - strandat 48.165 kb on - strandat 48.165 kb on - strandat 48.242 kb on + strandat 48.242 kb on + strandat 48.263 kb on + strandat 48.264 kb on - strandat 48.264 kb on - strandat 48.341 kb on + strand, within Ac3H11_933at 48.342 kb on - strand, within Ac3H11_933at 48.342 kb on - strand, within Ac3H11_933at 48.367 kb on + strand, within Ac3H11_933at 48.374 kb on + strand, within Ac3H11_933at 48.374 kb on + strand, within Ac3H11_933at 48.374 kb on + strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.431 kb on + strand, within Ac3H11_933at 48.431 kb on + strand, within Ac3H11_933at 48.432 kb on - strand, within Ac3H11_933at 48.432 kb on - strand, within Ac3H11_933at 48.443 kb on + strand, within Ac3H11_933at 48.443 kb on + strand, within Ac3H11_933at 48.443 kb on + strand, within Ac3H11_933at 48.443 kb on + strand, within Ac3H11_933at 48.444 kb on - strand, within Ac3H11_933at 48.470 kb on + strand, within Ac3H11_933at 48.470 kb on + strand, within Ac3H11_933at 48.471 kb on - strand, within Ac3H11_933at 48.471 kb on - strand, within Ac3H11_933at 48.471 kb on - strand, within Ac3H11_933at 48.812 kb on + strand, within Ac3H11_933at 48.812 kb on + strand, within Ac3H11_933at 48.812 kb on + strand, within Ac3H11_933at 48.813 kb on - strand, within Ac3H11_933at 48.813 kb on - strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.817 kb on - strand, within Ac3H11_933at 48.817 kb on - strand, within Ac3H11_933at 48.817 kb on - strand, within Ac3H11_933at 48.817 kb on - strand, within Ac3H11_933

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 20 mM
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46,674 + +0.3
46,976 + Ac3H11_932 0.19 -0.7
47,111 + Ac3H11_932 0.30 -0.5
47,111 + Ac3H11_932 0.30 +2.1
47,111 + Ac3H11_932 0.30 -0.8
47,111 + Ac3H11_932 0.30 -3.4
47,112 - Ac3H11_932 0.30 +0.1
47,112 - Ac3H11_932 0.30 -0.1
47,327 + Ac3H11_932 0.47 -0.2
47,327 + Ac3H11_932 0.47 +0.6
47,328 - Ac3H11_932 0.47 -0.3
47,328 - Ac3H11_932 0.47 +0.1
47,328 - Ac3H11_932 0.47 -3.1
47,328 - Ac3H11_932 0.47 +0.0
47,642 + Ac3H11_932 0.73 +0.5
47,643 - Ac3H11_932 0.73 +1.0
47,643 - Ac3H11_932 0.73 -0.7
47,643 - Ac3H11_932 0.73 -0.1
47,643 - Ac3H11_932 0.73 -0.0
47,643 - Ac3H11_932 0.73 -0.4
47,741 + Ac3H11_932 0.81 -0.5
47,741 + Ac3H11_932 0.81 +0.0
47,741 + Ac3H11_932 0.81 -0.4
47,742 - Ac3H11_932 0.81 -0.3
47,742 - Ac3H11_932 0.81 -1.5
47,742 - Ac3H11_932 0.81 -0.1
47,742 - Ac3H11_932 0.81 +0.9
47,894 + +0.1
47,895 - -0.6
48,063 - +0.6
48,063 - -0.6
48,063 - +0.3
48,101 + +0.3
48,102 - -0.6
48,164 + -2.1
48,164 + -0.0
48,164 + +0.2
48,164 + +0.3
48,164 + -0.3
48,165 - +0.1
48,165 - -0.3
48,165 - -0.5
48,242 + -1.7
48,242 + -0.6
48,263 + +0.9
48,264 - -0.4
48,264 - +0.2
48,341 + Ac3H11_933 0.11 +0.6
48,342 - Ac3H11_933 0.11 -1.0
48,342 - Ac3H11_933 0.11 -1.4
48,367 + Ac3H11_933 0.12 +1.3
48,374 + Ac3H11_933 0.12 +0.1
48,374 + Ac3H11_933 0.12 +0.4
48,374 + Ac3H11_933 0.12 -0.7
48,375 - Ac3H11_933 0.12 +0.7
48,375 - Ac3H11_933 0.12 -1.2
48,375 - Ac3H11_933 0.12 -0.6
48,375 - Ac3H11_933 0.12 +0.2
48,375 - Ac3H11_933 0.12 +0.5
48,375 - Ac3H11_933 0.12 +0.2
48,431 + Ac3H11_933 0.14 +0.3
48,431 + Ac3H11_933 0.14 -1.2
48,432 - Ac3H11_933 0.14 +0.2
48,432 - Ac3H11_933 0.14 -0.1
48,443 + Ac3H11_933 0.14 +0.4
48,443 + Ac3H11_933 0.14 +0.7
48,443 + Ac3H11_933 0.14 +0.1
48,443 + Ac3H11_933 0.14 +0.3
48,444 - Ac3H11_933 0.14 +0.0
48,470 + Ac3H11_933 0.15 -0.5
48,470 + Ac3H11_933 0.15 -0.3
48,471 - Ac3H11_933 0.15 +1.5
48,471 - Ac3H11_933 0.15 +0.2
48,471 - Ac3H11_933 0.15 +0.1
48,812 + Ac3H11_933 0.26 +0.9
48,812 + Ac3H11_933 0.26 +0.7
48,812 + Ac3H11_933 0.26 +0.9
48,813 - Ac3H11_933 0.26 +0.9
48,813 - Ac3H11_933 0.26 +1.1
48,816 + Ac3H11_933 0.26 -0.3
48,816 + Ac3H11_933 0.26 -1.1
48,816 + Ac3H11_933 0.26 -0.2
48,816 + Ac3H11_933 0.26 +0.1
48,816 + Ac3H11_933 0.26 -0.8
48,816 + Ac3H11_933 0.26 +1.2
48,816 + Ac3H11_933 0.26 +0.2
48,817 - Ac3H11_933 0.26 -0.6
48,817 - Ac3H11_933 0.26 -0.4
48,817 - Ac3H11_933 0.26 -0.1
48,817 - Ac3H11_933 0.26 +1.1

Or see this region's nucleotide sequence