Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3697

Experiment: sodium fluoride 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3695 and Ac3H11_3696 are separated by 92 nucleotidesAc3H11_3696 and Ac3H11_3697 are separated by 193 nucleotidesAc3H11_3697 and Ac3H11_3698 are separated by 75 nucleotides Ac3H11_3695 - Two-component response regulator, at 53,110 to 54,198 _3695 Ac3H11_3696 - FIG01198930: hypothetical protein, at 54,291 to 54,977 _3696 Ac3H11_3697 - Conservative hypothetical protein probably involved in hydantoin, pyrimidine utilization # coupled to 3.5.2.14 or similar function, at 55,171 to 56,355 _3697 Ac3H11_3698 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 56,431 to 57,483 _3698 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2at 54.239 kb on + strandat 54.261 kb on - strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.293 kb on - strandat 54.293 kb on - strandat 54.293 kb on - strandat 54.293 kb on - strandat 54.293 kb on - strandat 54.293 kb on - strandat 54.424 kb on + strand, within Ac3H11_3696at 54.425 kb on - strand, within Ac3H11_3696at 54.466 kb on + strand, within Ac3H11_3696at 54.490 kb on + strand, within Ac3H11_3696at 54.490 kb on + strand, within Ac3H11_3696at 54.490 kb on + strand, within Ac3H11_3696at 54.490 kb on + strand, within Ac3H11_3696at 54.490 kb on + strand, within Ac3H11_3696at 54.491 kb on - strand, within Ac3H11_3696at 54.491 kb on - strand, within Ac3H11_3696at 54.491 kb on - strand, within Ac3H11_3696at 54.491 kb on - strand, within Ac3H11_3696at 54.491 kb on - strand, within Ac3H11_3696at 54.534 kb on + strand, within Ac3H11_3696at 54.685 kb on + strand, within Ac3H11_3696at 54.686 kb on - strand, within Ac3H11_3696at 54.686 kb on - strand, within Ac3H11_3696at 54.686 kb on - strand, within Ac3H11_3696at 54.686 kb on - strand, within Ac3H11_3696at 54.686 kb on - strand, within Ac3H11_3696at 54.730 kb on + strand, within Ac3H11_3696at 54.730 kb on + strand, within Ac3H11_3696at 54.731 kb on - strand, within Ac3H11_3696at 54.731 kb on - strand, within Ac3H11_3696at 54.731 kb on - strand, within Ac3H11_3696at 54.731 kb on - strand, within Ac3H11_3696at 54.740 kb on - strand, within Ac3H11_3696at 54.740 kb on - strand, within Ac3H11_3696at 54.868 kb on + strand, within Ac3H11_3696at 54.869 kb on - strand, within Ac3H11_3696at 55.023 kb on - strandat 55.183 kb on + strandat 55.183 kb on + strandat 55.183 kb on + strandat 55.183 kb on + strandat 55.184 kb on - strandat 55.184 kb on - strandat 55.184 kb on - strandat 55.184 kb on - strandat 55.184 kb on - strandat 55.190 kb on - strandat 55.190 kb on - strandat 55.303 kb on + strand, within Ac3H11_3697at 55.304 kb on - strand, within Ac3H11_3697at 55.331 kb on - strand, within Ac3H11_3697at 55.816 kb on + strand, within Ac3H11_3697at 55.816 kb on + strand, within Ac3H11_3697at 55.817 kb on - strand, within Ac3H11_3697at 55.817 kb on - strand, within Ac3H11_3697at 55.817 kb on - strand, within Ac3H11_3697at 55.957 kb on + strand, within Ac3H11_3697at 55.958 kb on - strand, within Ac3H11_3697at 55.958 kb on - strand, within Ac3H11_3697at 55.958 kb on - strand, within Ac3H11_3697at 55.960 kb on - strand, within Ac3H11_3697at 55.960 kb on - strand, within Ac3H11_3697at 56.059 kb on + strand, within Ac3H11_3697at 56.060 kb on - strand, within Ac3H11_3697at 56.060 kb on - strand, within Ac3H11_3697at 56.065 kb on + strand, within Ac3H11_3697at 56.066 kb on - strand, within Ac3H11_3697at 56.066 kb on - strand, within Ac3H11_3697at 56.066 kb on - strand, within Ac3H11_3697at 56.066 kb on - strand, within Ac3H11_3697at 56.093 kb on - strand, within Ac3H11_3697at 56.276 kb on - strandat 56.276 kb on - strandat 56.453 kb on + strandat 56.614 kb on + strand, within Ac3H11_3698at 56.614 kb on + strand, within Ac3H11_3698at 56.614 kb on + strand, within Ac3H11_3698at 56.614 kb on + strand, within Ac3H11_3698at 56.614 kb on + strand, within Ac3H11_3698at 56.749 kb on + strand, within Ac3H11_3698at 56.749 kb on + strand, within Ac3H11_3698at 56.749 kb on + strand, within Ac3H11_3698at 56.749 kb on + strand, within Ac3H11_3698at 56.750 kb on - strand, within Ac3H11_3698at 56.750 kb on - strand, within Ac3H11_3698at 56.750 kb on - strand, within Ac3H11_3698at 56.750 kb on - strand, within Ac3H11_3698at 56.986 kb on + strand, within Ac3H11_3698at 56.986 kb on + strand, within Ac3H11_3698at 56.987 kb on - strand, within Ac3H11_3698at 56.987 kb on - strand, within Ac3H11_3698

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 20 mM
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54,239 + -0.3
54,261 - -0.2
54,292 + -1.1
54,292 + +0.6
54,292 + +0.7
54,292 + -1.9
54,292 + +0.5
54,292 + +0.1
54,292 + +0.3
54,292 + +0.8
54,293 - +1.4
54,293 - -0.1
54,293 - +0.0
54,293 - +0.1
54,293 - -0.8
54,293 - -1.1
54,424 + Ac3H11_3696 0.19 +0.8
54,425 - Ac3H11_3696 0.20 -0.2
54,466 + Ac3H11_3696 0.25 +0.6
54,490 + Ac3H11_3696 0.29 +0.1
54,490 + Ac3H11_3696 0.29 +0.6
54,490 + Ac3H11_3696 0.29 +0.9
54,490 + Ac3H11_3696 0.29 +0.8
54,490 + Ac3H11_3696 0.29 -2.1
54,491 - Ac3H11_3696 0.29 -0.6
54,491 - Ac3H11_3696 0.29 +0.0
54,491 - Ac3H11_3696 0.29 -0.8
54,491 - Ac3H11_3696 0.29 -0.4
54,491 - Ac3H11_3696 0.29 -0.4
54,534 + Ac3H11_3696 0.35 +0.4
54,685 + Ac3H11_3696 0.57 -1.4
54,686 - Ac3H11_3696 0.57 +1.5
54,686 - Ac3H11_3696 0.57 -1.2
54,686 - Ac3H11_3696 0.57 +0.6
54,686 - Ac3H11_3696 0.57 -0.4
54,686 - Ac3H11_3696 0.57 -0.5
54,730 + Ac3H11_3696 0.64 -1.5
54,730 + Ac3H11_3696 0.64 -0.8
54,731 - Ac3H11_3696 0.64 -1.1
54,731 - Ac3H11_3696 0.64 -1.6
54,731 - Ac3H11_3696 0.64 -0.1
54,731 - Ac3H11_3696 0.64 +0.4
54,740 - Ac3H11_3696 0.65 +1.2
54,740 - Ac3H11_3696 0.65 +0.9
54,868 + Ac3H11_3696 0.84 +2.1
54,869 - Ac3H11_3696 0.84 +0.5
55,023 - +0.6
55,183 + +0.5
55,183 + +0.5
55,183 + -1.6
55,183 + -1.2
55,184 - -0.2
55,184 - -0.3
55,184 - -0.1
55,184 - -0.4
55,184 - -0.3
55,190 - -0.9
55,190 - +0.6
55,303 + Ac3H11_3697 0.11 -0.1
55,304 - Ac3H11_3697 0.11 -0.2
55,331 - Ac3H11_3697 0.14 -0.4
55,816 + Ac3H11_3697 0.54 +1.4
55,816 + Ac3H11_3697 0.54 -0.5
55,817 - Ac3H11_3697 0.55 +0.1
55,817 - Ac3H11_3697 0.55 -0.1
55,817 - Ac3H11_3697 0.55 +0.4
55,957 + Ac3H11_3697 0.66 +1.1
55,958 - Ac3H11_3697 0.66 +0.4
55,958 - Ac3H11_3697 0.66 +1.8
55,958 - Ac3H11_3697 0.66 -1.3
55,960 - Ac3H11_3697 0.67 +0.2
55,960 - Ac3H11_3697 0.67 +0.1
56,059 + Ac3H11_3697 0.75 +0.4
56,060 - Ac3H11_3697 0.75 -0.6
56,060 - Ac3H11_3697 0.75 -0.1
56,065 + Ac3H11_3697 0.75 -0.4
56,066 - Ac3H11_3697 0.76 +0.8
56,066 - Ac3H11_3697 0.76 -0.1
56,066 - Ac3H11_3697 0.76 -0.9
56,066 - Ac3H11_3697 0.76 +0.5
56,093 - Ac3H11_3697 0.78 -0.4
56,276 - -0.6
56,276 - +0.3
56,453 + +0.8
56,614 + Ac3H11_3698 0.17 -1.1
56,614 + Ac3H11_3698 0.17 -1.0
56,614 + Ac3H11_3698 0.17 +0.5
56,614 + Ac3H11_3698 0.17 +0.2
56,614 + Ac3H11_3698 0.17 +0.8
56,749 + Ac3H11_3698 0.30 -0.9
56,749 + Ac3H11_3698 0.30 -0.5
56,749 + Ac3H11_3698 0.30 +1.0
56,749 + Ac3H11_3698 0.30 +0.7
56,750 - Ac3H11_3698 0.30 -0.1
56,750 - Ac3H11_3698 0.30 -0.2
56,750 - Ac3H11_3698 0.30 +0.1
56,750 - Ac3H11_3698 0.30 -1.3
56,986 + Ac3H11_3698 0.53 +0.9
56,986 + Ac3H11_3698 0.53 -0.2
56,987 - Ac3H11_3698 0.53 +0.5
56,987 - Ac3H11_3698 0.53 -0.3

Or see this region's nucleotide sequence