Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3104

Experiment: sodium fluoride 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3102 and Ac3H11_3103 are separated by 439 nucleotidesAc3H11_3103 and Ac3H11_3104 are separated by 36 nucleotidesAc3H11_3104 and Ac3H11_3105 are separated by 288 nucleotides Ac3H11_3102 - Lipoprotein, putative, at 1,357 to 1,980 _3102 Ac3H11_3103 - putative nuclease, at 2,420 to 2,857 _3103 Ac3H11_3104 - putative flagellin, at 2,894 to 4,597 _3104 Ac3H11_3105 - MFS general substrate transporter, at 4,886 to 6,157 _3105 Position (kb) 2 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2at 2.136 kb on + strandat 2.136 kb on + strandat 2.136 kb on + strandat 2.137 kb on - strandat 2.137 kb on - strandat 2.137 kb on - strandat 2.139 kb on - strandat 2.167 kb on + strandat 2.225 kb on + strandat 2.299 kb on + strandat 2.353 kb on - strandat 2.642 kb on + strand, within Ac3H11_3103at 2.643 kb on - strand, within Ac3H11_3103at 2.643 kb on - strand, within Ac3H11_3103at 2.643 kb on - strand, within Ac3H11_3103at 2.643 kb on - strand, within Ac3H11_3103at 2.664 kb on + strand, within Ac3H11_3103at 2.664 kb on + strand, within Ac3H11_3103at 2.664 kb on + strand, within Ac3H11_3103at 2.664 kb on + strand, within Ac3H11_3103at 2.665 kb on - strand, within Ac3H11_3103at 2.665 kb on - strand, within Ac3H11_3103at 2.665 kb on - strand, within Ac3H11_3103at 2.723 kb on + strand, within Ac3H11_3103at 2.723 kb on + strand, within Ac3H11_3103at 2.723 kb on + strand, within Ac3H11_3103at 2.723 kb on + strand, within Ac3H11_3103at 2.724 kb on - strand, within Ac3H11_3103at 3.133 kb on - strand, within Ac3H11_3104at 3.319 kb on - strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.582 kb on + strand, within Ac3H11_3104at 3.583 kb on - strand, within Ac3H11_3104at 3.583 kb on - strand, within Ac3H11_3104at 3.583 kb on - strand, within Ac3H11_3104at 3.639 kb on + strand, within Ac3H11_3104at 3.640 kb on - strand, within Ac3H11_3104at 3.654 kb on + strand, within Ac3H11_3104at 3.655 kb on - strand, within Ac3H11_3104at 3.666 kb on + strand, within Ac3H11_3104at 3.666 kb on + strand, within Ac3H11_3104at 3.666 kb on + strand, within Ac3H11_3104at 3.667 kb on - strand, within Ac3H11_3104at 3.667 kb on - strand, within Ac3H11_3104at 3.680 kb on - strand, within Ac3H11_3104at 3.680 kb on - strand, within Ac3H11_3104at 3.879 kb on + strand, within Ac3H11_3104at 3.879 kb on + strand, within Ac3H11_3104at 3.880 kb on - strand, within Ac3H11_3104at 3.993 kb on + strand, within Ac3H11_3104at 3.993 kb on + strand, within Ac3H11_3104at 4.074 kb on + strand, within Ac3H11_3104at 4.571 kb on + strandat 4.571 kb on + strandat 4.571 kb on + strandat 4.572 kb on - strandat 4.572 kb on - strandat 4.632 kb on + strandat 4.632 kb on + strandat 4.633 kb on - strandat 4.637 kb on - strandat 4.642 kb on + strandat 4.643 kb on - strandat 4.643 kb on - strandat 4.774 kb on - strandat 4.797 kb on + strandat 4.798 kb on - strandat 5.033 kb on + strand, within Ac3H11_3105at 5.033 kb on + strand, within Ac3H11_3105at 5.034 kb on - strand, within Ac3H11_3105at 5.066 kb on + strand, within Ac3H11_3105at 5.066 kb on + strand, within Ac3H11_3105at 5.067 kb on - strand, within Ac3H11_3105at 5.067 kb on - strand, within Ac3H11_3105at 5.067 kb on - strand, within Ac3H11_3105at 5.067 kb on - strand, within Ac3H11_3105at 5.107 kb on - strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.241 kb on - strand, within Ac3H11_3105at 5.241 kb on - strand, within Ac3H11_3105at 5.258 kb on + strand, within Ac3H11_3105at 5.258 kb on + strand, within Ac3H11_3105at 5.258 kb on + strand, within Ac3H11_3105at 5.259 kb on - strand, within Ac3H11_3105at 5.408 kb on + strand, within Ac3H11_3105at 5.409 kb on - strand, within Ac3H11_3105at 5.409 kb on - strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.436 kb on - strand, within Ac3H11_3105at 5.436 kb on - strand, within Ac3H11_3105at 5.436 kb on - strand, within Ac3H11_3105

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 20 mM
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2,136 + -0.8
2,136 + +0.2
2,136 + +1.3
2,137 - +0.7
2,137 - +1.0
2,137 - +0.9
2,139 - -0.1
2,167 + +0.1
2,225 + -1.0
2,299 + +0.6
2,353 - +0.5
2,642 + Ac3H11_3103 0.51 +0.7
2,643 - Ac3H11_3103 0.51 -0.2
2,643 - Ac3H11_3103 0.51 +0.6
2,643 - Ac3H11_3103 0.51 -0.2
2,643 - Ac3H11_3103 0.51 +0.7
2,664 + Ac3H11_3103 0.56 +0.4
2,664 + Ac3H11_3103 0.56 +0.7
2,664 + Ac3H11_3103 0.56 -0.2
2,664 + Ac3H11_3103 0.56 -0.5
2,665 - Ac3H11_3103 0.56 +0.0
2,665 - Ac3H11_3103 0.56 +0.7
2,665 - Ac3H11_3103 0.56 +0.2
2,723 + Ac3H11_3103 0.69 +0.5
2,723 + Ac3H11_3103 0.69 +1.8
2,723 + Ac3H11_3103 0.69 -0.3
2,723 + Ac3H11_3103 0.69 -0.4
2,724 - Ac3H11_3103 0.69 +1.1
3,133 - Ac3H11_3104 0.14 -0.5
3,319 - Ac3H11_3104 0.25 -0.4
3,582 + Ac3H11_3104 0.40 +0.5
3,582 + Ac3H11_3104 0.40 -2.6
3,582 + Ac3H11_3104 0.40 +1.0
3,582 + Ac3H11_3104 0.40 +1.0
3,582 + Ac3H11_3104 0.40 +0.9
3,582 + Ac3H11_3104 0.40 -0.1
3,582 + Ac3H11_3104 0.40 +1.0
3,583 - Ac3H11_3104 0.40 +0.9
3,583 - Ac3H11_3104 0.40 -0.4
3,583 - Ac3H11_3104 0.40 +2.7
3,639 + Ac3H11_3104 0.44 +0.9
3,640 - Ac3H11_3104 0.44 -2.2
3,654 + Ac3H11_3104 0.45 +0.5
3,655 - Ac3H11_3104 0.45 +0.5
3,666 + Ac3H11_3104 0.45 +0.5
3,666 + Ac3H11_3104 0.45 -2.1
3,666 + Ac3H11_3104 0.45 +0.6
3,667 - Ac3H11_3104 0.45 +0.2
3,667 - Ac3H11_3104 0.45 +0.8
3,680 - Ac3H11_3104 0.46 -0.4
3,680 - Ac3H11_3104 0.46 +0.2
3,879 + Ac3H11_3104 0.58 +0.8
3,879 + Ac3H11_3104 0.58 +1.4
3,880 - Ac3H11_3104 0.58 +1.0
3,993 + Ac3H11_3104 0.64 -0.9
3,993 + Ac3H11_3104 0.64 +0.4
4,074 + Ac3H11_3104 0.69 -0.1
4,571 + -0.4
4,571 + -1.4
4,571 + +0.5
4,572 - -1.1
4,572 - -0.1
4,632 + +1.1
4,632 + -0.1
4,633 - +2.2
4,637 - -0.0
4,642 + +0.7
4,643 - +0.4
4,643 - -1.0
4,774 - -0.4
4,797 + -0.6
4,798 - +0.4
5,033 + Ac3H11_3105 0.12 -0.7
5,033 + Ac3H11_3105 0.12 +0.6
5,034 - Ac3H11_3105 0.12 +0.9
5,066 + Ac3H11_3105 0.14 +2.7
5,066 + Ac3H11_3105 0.14 +0.2
5,067 - Ac3H11_3105 0.14 +0.6
5,067 - Ac3H11_3105 0.14 +0.1
5,067 - Ac3H11_3105 0.14 +0.9
5,067 - Ac3H11_3105 0.14 -0.7
5,107 - Ac3H11_3105 0.17 -1.0
5,240 + Ac3H11_3105 0.28 +0.6
5,240 + Ac3H11_3105 0.28 +0.5
5,240 + Ac3H11_3105 0.28 -0.2
5,240 + Ac3H11_3105 0.28 +0.5
5,240 + Ac3H11_3105 0.28 +0.3
5,240 + Ac3H11_3105 0.28 -0.1
5,240 + Ac3H11_3105 0.28 +0.1
5,240 + Ac3H11_3105 0.28 +0.1
5,240 + Ac3H11_3105 0.28 +0.2
5,241 - Ac3H11_3105 0.28 -0.4
5,241 - Ac3H11_3105 0.28 -0.1
5,258 + Ac3H11_3105 0.29 -1.1
5,258 + Ac3H11_3105 0.29 +0.3
5,258 + Ac3H11_3105 0.29 +0.4
5,259 - Ac3H11_3105 0.29 +1.2
5,408 + Ac3H11_3105 0.41 -0.1
5,409 - Ac3H11_3105 0.41 +0.2
5,409 - Ac3H11_3105 0.41 +1.1
5,435 + Ac3H11_3105 0.43 -1.7
5,435 + Ac3H11_3105 0.43 +0.1
5,435 + Ac3H11_3105 0.43 +0.1
5,435 + Ac3H11_3105 0.43 +0.4
5,435 + Ac3H11_3105 0.43 +0.3
5,435 + Ac3H11_3105 0.43 +0.5
5,435 + Ac3H11_3105 0.43 -0.1
5,436 - Ac3H11_3105 0.43 +0.2
5,436 - Ac3H11_3105 0.43 +0.4
5,436 - Ac3H11_3105 0.43 +1.0

Or see this region's nucleotide sequence