Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS33835 and AZOBR_RS33840 are separated by 31 nucleotides AZOBR_RS33840 and AZOBR_RS33845 overlap by 11 nucleotides
AZOBR_RS33835: AZOBR_RS33835 - hypothetical protein, at 130,660 to 131,811
_RS33835
AZOBR_RS33840: AZOBR_RS33840 - hypothetical protein, at 131,843 to 132,091
_RS33840
AZOBR_RS33845: AZOBR_RS33845 - heptosyltransferase, at 132,081 to 133,145
_RS33845
Position (kb) 130
131
132 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 129.866 kb on + strand at 129.866 kb on + strand at 129.866 kb on + strand at 129.921 kb on + strand at 129.922 kb on - strand at 129.922 kb on - strand at 129.922 kb on - strand at 129.922 kb on - strand at 130.038 kb on + strand at 130.362 kb on + strand at 130.399 kb on - strand at 130.442 kb on - strand at 130.447 kb on + strand at 130.447 kb on + strand at 130.634 kb on + strand at 130.836 kb on + strand, within AZOBR_RS33835 at 130.836 kb on + strand, within AZOBR_RS33835 at 130.837 kb on - strand, within AZOBR_RS33835 at 130.859 kb on - strand, within AZOBR_RS33835 at 131.149 kb on + strand, within AZOBR_RS33835 at 131.242 kb on + strand, within AZOBR_RS33835 at 131.242 kb on + strand, within AZOBR_RS33835 at 131.242 kb on + strand, within AZOBR_RS33835 at 131.242 kb on + strand, within AZOBR_RS33835 at 131.242 kb on + strand, within AZOBR_RS33835 at 131.243 kb on - strand, within AZOBR_RS33835 at 131.243 kb on - strand, within AZOBR_RS33835 at 131.243 kb on - strand, within AZOBR_RS33835 at 131.243 kb on - strand, within AZOBR_RS33835 at 131.317 kb on + strand, within AZOBR_RS33835 at 131.411 kb on - strand, within AZOBR_RS33835 at 132.021 kb on + strand, within AZOBR_RS33840 at 132.021 kb on + strand, within AZOBR_RS33840 at 132.021 kb on + strand, within AZOBR_RS33840 at 132.021 kb on + strand, within AZOBR_RS33840 at 132.022 kb on - strand, within AZOBR_RS33840 at 132.022 kb on - strand, within AZOBR_RS33840 at 132.160 kb on + strand at 132.160 kb on + strand at 132.161 kb on - strand at 132.161 kb on - strand at 132.161 kb on - strand at 132.161 kb on - strand at 132.161 kb on - strand at 132.305 kb on - strand, within AZOBR_RS33845 at 132.748 kb on + strand, within AZOBR_RS33845 at 132.749 kb on - strand, within AZOBR_RS33845 at 132.749 kb on - strand, within AZOBR_RS33845 at 132.749 kb on - strand, within AZOBR_RS33845 at 132.769 kb on + strand, within AZOBR_RS33845 at 132.770 kb on - strand, within AZOBR_RS33845
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 129,866 + +1.0 129,866 + +0.3 129,866 + -0.3 129,921 + +0.9 129,922 - -0.2 129,922 - +0.1 129,922 - +0.2 129,922 - -0.1 130,038 + -0.0 130,362 + +0.4 130,399 - +0.1 130,442 - +1.0 130,447 + +0.3 130,447 + +1.5 130,634 + -1.4 130,836 + AZOBR_RS33835 0.15 -0.8 130,836 + AZOBR_RS33835 0.15 +0.5 130,837 - AZOBR_RS33835 0.15 +0.5 130,859 - AZOBR_RS33835 0.17 +0.3 131,149 + AZOBR_RS33835 0.42 +0.3 131,242 + AZOBR_RS33835 0.51 +0.2 131,242 + AZOBR_RS33835 0.51 -0.7 131,242 + AZOBR_RS33835 0.51 +0.3 131,242 + AZOBR_RS33835 0.51 +0.6 131,242 + AZOBR_RS33835 0.51 +0.3 131,243 - AZOBR_RS33835 0.51 +0.7 131,243 - AZOBR_RS33835 0.51 +0.6 131,243 - AZOBR_RS33835 0.51 +0.7 131,243 - AZOBR_RS33835 0.51 -3.1 131,317 + AZOBR_RS33835 0.57 +0.9 131,411 - AZOBR_RS33835 0.65 +0.3 132,021 + AZOBR_RS33840 0.71 -0.9 132,021 + AZOBR_RS33840 0.71 -2.2 132,021 + AZOBR_RS33840 0.71 -1.9 132,021 + AZOBR_RS33840 0.71 -3.0 132,022 - AZOBR_RS33840 0.72 -2.9 132,022 - AZOBR_RS33840 0.72 -2.6 132,160 + -0.7 132,160 + -2.2 132,161 - +1.0 132,161 - -2.1 132,161 - -2.6 132,161 - -3.8 132,161 - -3.3 132,305 - AZOBR_RS33845 0.21 -2.5 132,748 + AZOBR_RS33845 0.63 -3.4 132,749 - AZOBR_RS33845 0.63 -3.3 132,749 - AZOBR_RS33845 0.63 -2.3 132,749 - AZOBR_RS33845 0.63 -1.9 132,769 + AZOBR_RS33845 0.65 -2.4 132,770 - AZOBR_RS33845 0.65 -2.3
Or see this region's nucleotide sequence