Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33820

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33815 and AZOBR_RS33820 are separated by 736 nucleotidesAZOBR_RS33820 and AZOBR_RS33825 are separated by 190 nucleotides AZOBR_RS33815: AZOBR_RS33815 - hypothetical protein, at 124,057 to 124,761 _RS33815 AZOBR_RS33820: AZOBR_RS33820 - hypothetical protein, at 125,498 to 126,271 _RS33820 AZOBR_RS33825: AZOBR_RS33825 - hypothetical protein, at 126,462 to 127,604 _RS33825 Position (kb) 125 126 127Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 124.660 kb on + strand, within AZOBR_RS33815at 124.775 kb on - strandat 125.084 kb on + strandat 125.084 kb on + strandat 125.084 kb on + strandat 125.084 kb on + strandat 125.084 kb on + strandat 125.084 kb on + strandat 125.084 kb on + strandat 125.085 kb on - strandat 125.085 kb on - strandat 125.085 kb on - strandat 125.086 kb on + strandat 125.086 kb on + strandat 125.087 kb on - strandat 125.285 kb on + strandat 125.285 kb on + strandat 125.285 kb on + strandat 125.286 kb on - strandat 125.286 kb on - strandat 125.292 kb on - strandat 125.367 kb on - strandat 125.414 kb on + strandat 125.414 kb on + strandat 125.414 kb on + strandat 125.414 kb on + strandat 125.415 kb on - strandat 125.579 kb on + strand, within AZOBR_RS33820at 125.579 kb on + strand, within AZOBR_RS33820at 125.579 kb on + strand, within AZOBR_RS33820at 125.579 kb on + strand, within AZOBR_RS33820at 125.579 kb on + strand, within AZOBR_RS33820at 125.580 kb on - strand, within AZOBR_RS33820at 125.580 kb on - strand, within AZOBR_RS33820at 125.633 kb on + strand, within AZOBR_RS33820at 125.634 kb on - strand, within AZOBR_RS33820at 125.846 kb on + strand, within AZOBR_RS33820at 125.846 kb on + strand, within AZOBR_RS33820at 125.846 kb on + strand, within AZOBR_RS33820at 125.846 kb on + strandat 125.846 kb on + strand, within AZOBR_RS33820at 125.847 kb on - strand, within AZOBR_RS33820at 125.847 kb on - strand, within AZOBR_RS33820at 125.994 kb on - strand, within AZOBR_RS33820at 125.994 kb on - strand, within AZOBR_RS33820at 125.994 kb on - strand, within AZOBR_RS33820at 126.239 kb on + strandat 126.239 kb on + strandat 126.350 kb on + strandat 127.119 kb on - strand, within AZOBR_RS33825at 127.119 kb on - strand, within AZOBR_RS33825at 127.129 kb on - strand, within AZOBR_RS33825at 127.129 kb on - strand, within AZOBR_RS33825at 127.246 kb on + strandat 127.246 kb on + strand, within AZOBR_RS33825at 127.247 kb on - strand, within AZOBR_RS33825at 127.247 kb on - strand, within AZOBR_RS33825at 127.247 kb on - strand, within AZOBR_RS33825

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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124,660 + AZOBR_RS33815 0.86 -2.6
124,775 - -2.0
125,084 + +0.7
125,084 + +0.7
125,084 + -0.1
125,084 + -0.5
125,084 + +1.0
125,084 + -0.6
125,084 + +1.0
125,085 - -0.6
125,085 - -1.8
125,085 - -0.6
125,086 + -0.2
125,086 + +0.2
125,087 - -0.6
125,285 + -0.8
125,285 + -3.8
125,285 + -1.8
125,286 - -0.4
125,286 - -0.9
125,292 - -0.6
125,367 - -1.4
125,414 + -3.0
125,414 + -0.4
125,414 + -1.7
125,414 + -0.2
125,415 - -0.6
125,579 + AZOBR_RS33820 0.10 -1.3
125,579 + AZOBR_RS33820 0.10 -1.4
125,579 + AZOBR_RS33820 0.10 -2.7
125,579 + AZOBR_RS33820 0.10 -2.4
125,579 + AZOBR_RS33820 0.10 -3.3
125,580 - AZOBR_RS33820 0.11 -0.5
125,580 - AZOBR_RS33820 0.11 +0.2
125,633 + AZOBR_RS33820 0.17 +0.9
125,634 - AZOBR_RS33820 0.18 -0.8
125,846 + AZOBR_RS33820 0.45 -1.4
125,846 + AZOBR_RS33820 0.45 -1.8
125,846 + AZOBR_RS33820 0.45 -2.8
125,846 + -0.0
125,846 + AZOBR_RS33820 0.45 -0.8
125,847 - AZOBR_RS33820 0.45 +0.6
125,847 - AZOBR_RS33820 0.45 -1.4
125,994 - AZOBR_RS33820 0.64 -3.9
125,994 - AZOBR_RS33820 0.64 -0.6
125,994 - AZOBR_RS33820 0.64 -0.9
126,239 + -2.4
126,239 + -0.0
126,350 + +0.7
127,119 - AZOBR_RS33825 0.57 -0.9
127,119 - AZOBR_RS33825 0.57 -0.4
127,129 - AZOBR_RS33825 0.58 -0.7
127,129 - AZOBR_RS33825 0.58 -0.9
127,246 + +0.8
127,246 + AZOBR_RS33825 0.69 -1.6
127,247 - AZOBR_RS33825 0.69 -1.0
127,247 - AZOBR_RS33825 0.69 +1.1
127,247 - AZOBR_RS33825 0.69 -0.4

Or see this region's nucleotide sequence