Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26015 and AZOBR_RS26020 are separated by 380 nucleotides AZOBR_RS26020 and AZOBR_RS26025 are separated by 22 nucleotides
AZOBR_RS26015: AZOBR_RS26015 - hypothetical protein, at 888,176 to 888,523
_RS26015
AZOBR_RS26020: AZOBR_RS26020 - hypothetical protein, at 888,904 to 889,401
_RS26020
AZOBR_RS26025: AZOBR_RS26025 - alpha gluctosidase galactosidase, at 889,424 to 890,719
_RS26025
Position (kb) 888
889
890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 887.929 kb on + strand at 887.929 kb on + strand at 887.930 kb on - strand at 887.930 kb on - strand at 887.930 kb on - strand at 887.974 kb on + strand at 888.035 kb on + strand at 888.036 kb on - strand at 888.036 kb on - strand at 888.465 kb on + strand, within AZOBR_RS26015 at 888.465 kb on + strand, within AZOBR_RS26015 at 888.466 kb on - strand, within AZOBR_RS26015 at 888.466 kb on - strand, within AZOBR_RS26015 at 888.490 kb on + strand at 888.529 kb on - strand at 888.529 kb on - strand at 888.596 kb on + strand at 888.596 kb on + strand at 888.596 kb on + strand at 888.597 kb on - strand at 888.597 kb on - strand at 888.637 kb on + strand at 888.637 kb on + strand at 888.638 kb on - strand at 888.638 kb on - strand at 888.696 kb on + strand at 888.696 kb on + strand at 888.751 kb on - strand at 888.777 kb on + strand at 888.777 kb on + strand at 888.778 kb on - strand at 888.784 kb on - strand at 888.805 kb on + strand at 888.944 kb on - strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.443 kb on + strand at 889.444 kb on - strand at 889.444 kb on - strand at 889.723 kb on - strand, within AZOBR_RS26025 at 889.723 kb on - strand, within AZOBR_RS26025 at 889.938 kb on + strand, within AZOBR_RS26025 at 889.938 kb on + strand, within AZOBR_RS26025 at 889.939 kb on - strand, within AZOBR_RS26025 at 889.948 kb on + strand, within AZOBR_RS26025 at 889.948 kb on + strand, within AZOBR_RS26025 at 889.948 kb on + strand, within AZOBR_RS26025 at 889.948 kb on + strand, within AZOBR_RS26025 at 889.949 kb on - strand at 890.223 kb on + strand, within AZOBR_RS26025 at 890.223 kb on + strand, within AZOBR_RS26025 at 890.223 kb on + strand, within AZOBR_RS26025
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 887,929 + -1.9 887,929 + -3.2 887,930 - -1.7 887,930 - -1.3 887,930 - -1.3 887,974 + -2.0 888,035 + -0.1 888,036 - +0.6 888,036 - +0.5 888,465 + AZOBR_RS26015 0.83 +0.5 888,465 + AZOBR_RS26015 0.83 +0.5 888,466 - AZOBR_RS26015 0.83 +0.5 888,466 - AZOBR_RS26015 0.83 +0.4 888,490 + +0.3 888,529 - +0.8 888,529 - +0.6 888,596 + -1.6 888,596 + -0.2 888,596 + +0.2 888,597 - +0.3 888,597 - +0.6 888,637 + -0.7 888,637 + +0.3 888,638 - +0.2 888,638 - -0.3 888,696 + +0.1 888,696 + -1.1 888,751 - -1.1 888,777 + +0.3 888,777 + +0.6 888,778 - -0.4 888,784 - +0.8 888,805 + +0.1 888,944 - +0.5 889,425 + -0.2 889,425 + -1.6 889,426 - +0.2 889,426 - +0.5 889,443 + -0.1 889,444 - -0.4 889,444 - +0.3 889,723 - AZOBR_RS26025 0.23 +0.7 889,723 - AZOBR_RS26025 0.23 -1.5 889,938 + AZOBR_RS26025 0.40 +0.9 889,938 + AZOBR_RS26025 0.40 +1.3 889,939 - AZOBR_RS26025 0.40 +0.4 889,948 + AZOBR_RS26025 0.40 -0.1 889,948 + AZOBR_RS26025 0.40 +0.4 889,948 + AZOBR_RS26025 0.40 -0.6 889,948 + AZOBR_RS26025 0.40 +0.5 889,949 - +2.9 890,223 + AZOBR_RS26025 0.62 -0.2 890,223 + AZOBR_RS26025 0.62 +0.1 890,223 + AZOBR_RS26025 0.62 +0.2
Or see this region's nucleotide sequence