Experiment: Chloramphenicol 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27715 and AO353_27720 are separated by 85 nucleotides AO353_27720 and AO353_27725 overlap by 8 nucleotides AO353_27725 and AO353_27730 are separated by 250 nucleotides
AO353_27715: AO353_27715 - adenylosuccinate lyase, at 6,041,448 to 6,042,818
_27715
AO353_27720: AO353_27720 - cupin, at 6,042,904 to 6,044,070
_27720
AO353_27725: AO353_27725 - GNAT family acetyltransferase, at 6,044,063 to 6,044,485
_27725
AO353_27730: AO353_27730 - secretin, at 6,044,736 to 6,045,533
_27730
Position (kb)
6042
6043
6044
6045 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6043.315 kb on + strand, within AO353_27720 at 6043.315 kb on + strand, within AO353_27720 at 6043.315 kb on + strand, within AO353_27720 at 6043.315 kb on + strand, within AO353_27720 at 6043.315 kb on + strand, within AO353_27720 at 6043.316 kb on - strand, within AO353_27720 at 6043.471 kb on + strand, within AO353_27720 at 6043.471 kb on + strand, within AO353_27720 at 6043.471 kb on + strand, within AO353_27720 at 6043.472 kb on - strand, within AO353_27720 at 6043.472 kb on - strand, within AO353_27720 at 6043.615 kb on + strand, within AO353_27720 at 6043.615 kb on + strand, within AO353_27720 at 6043.762 kb on + strand, within AO353_27720 at 6044.068 kb on + strand at 6044.068 kb on + strand at 6044.079 kb on + strand at 6044.079 kb on + strand at 6044.079 kb on + strand at 6044.280 kb on + strand, within AO353_27725 at 6044.281 kb on - strand, within AO353_27725 at 6044.402 kb on + strand, within AO353_27725 at 6044.402 kb on + strand, within AO353_27725 at 6044.403 kb on - strand, within AO353_27725 at 6044.403 kb on - strand, within AO353_27725 at 6044.403 kb on - strand, within AO353_27725 at 6044.403 kb on - strand, within AO353_27725 at 6044.403 kb on - strand, within AO353_27725 at 6044.488 kb on - strand at 6044.543 kb on - strand at 6044.632 kb on - strand at 6044.703 kb on + strand at 6044.703 kb on + strand at 6044.704 kb on - strand at 6044.704 kb on - strand at 6044.717 kb on - strand at 6044.889 kb on + strand, within AO353_27730 at 6044.969 kb on - strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.051 kb on + strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730 at 6045.052 kb on - strand, within AO353_27730
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0025 mg/ml remove 6,043,315 + AO353_27720 0.35 -0.7 6,043,315 + AO353_27720 0.35 +1.0 6,043,315 + AO353_27720 0.35 +0.4 6,043,315 + AO353_27720 0.35 +1.4 6,043,315 + AO353_27720 0.35 +1.2 6,043,316 - AO353_27720 0.35 -3.1 6,043,471 + AO353_27720 0.49 +1.1 6,043,471 + AO353_27720 0.49 +1.4 6,043,471 + AO353_27720 0.49 +0.8 6,043,472 - AO353_27720 0.49 +2.6 6,043,472 - AO353_27720 0.49 +0.2 6,043,615 + AO353_27720 0.61 -0.8 6,043,615 + AO353_27720 0.61 +2.4 6,043,762 + AO353_27720 0.74 +0.8 6,044,068 + -0.5 6,044,068 + +1.7 6,044,079 + -0.7 6,044,079 + -0.4 6,044,079 + +0.6 6,044,280 + AO353_27725 0.51 -0.3 6,044,281 - AO353_27725 0.52 -0.6 6,044,402 + AO353_27725 0.80 -0.8 6,044,402 + AO353_27725 0.80 +0.4 6,044,403 - AO353_27725 0.80 +1.2 6,044,403 - AO353_27725 0.80 -0.9 6,044,403 - AO353_27725 0.80 -2.1 6,044,403 - AO353_27725 0.80 +0.4 6,044,403 - AO353_27725 0.80 -0.0 6,044,488 - -0.1 6,044,543 - -0.2 6,044,632 - +0.0 6,044,703 + +0.4 6,044,703 + -0.7 6,044,704 - -0.2 6,044,704 - +0.5 6,044,717 - +0.4 6,044,889 + AO353_27730 0.19 -0.5 6,044,969 - AO353_27730 0.29 +0.3 6,045,051 + AO353_27730 0.39 -0.2 6,045,051 + AO353_27730 0.39 +0.4 6,045,051 + AO353_27730 0.39 +0.1 6,045,051 + AO353_27730 0.39 +0.5 6,045,051 + AO353_27730 0.39 -1.8 6,045,051 + AO353_27730 0.39 -0.7 6,045,051 + AO353_27730 0.39 +0.8 6,045,052 - AO353_27730 0.40 +0.4 6,045,052 - AO353_27730 0.40 +0.8 6,045,052 - AO353_27730 0.40 -0.3 6,045,052 - AO353_27730 0.40 +0.4 6,045,052 - AO353_27730 0.40 -3.0 6,045,052 - AO353_27730 0.40 +0.2
Or see this region's nucleotide sequence