Experiment: Chloramphenicol 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26440 and AO353_26445 are separated by 111 nucleotides AO353_26445 and AO353_26450 are separated by 14 nucleotides AO353_26450 and AO353_26455 are separated by 79 nucleotides
AO353_26440: AO353_26440 - hypothetical protein, at 5,795,989 to 5,796,306
_26440
AO353_26445: AO353_26445 - hypothetical protein, at 5,796,418 to 5,796,822
_26445
AO353_26450: AO353_26450 - hypothetical protein, at 5,796,837 to 5,797,019
_26450
AO353_26455: AO353_26455 - Nin-like protein, at 5,797,099 to 5,797,956
_26455
Position (kb) 5796
5797
5798 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5795.860 kb on + strand at 5795.902 kb on + strand at 5795.902 kb on + strand at 5795.902 kb on + strand at 5795.940 kb on + strand at 5795.940 kb on + strand at 5795.941 kb on - strand at 5795.941 kb on - strand at 5795.941 kb on - strand at 5795.941 kb on - strand at 5795.998 kb on + strand at 5795.998 kb on + strand at 5795.999 kb on - strand at 5795.999 kb on - strand at 5796.128 kb on - strand, within AO353_26440 at 5796.139 kb on + strand, within AO353_26440 at 5796.140 kb on - strand, within AO353_26440 at 5796.140 kb on - strand, within AO353_26440 at 5796.140 kb on - strand, within AO353_26440 at 5796.150 kb on + strand, within AO353_26440 at 5796.151 kb on - strand, within AO353_26440 at 5796.151 kb on - strand, within AO353_26440 at 5796.151 kb on - strand, within AO353_26440 at 5796.154 kb on + strand, within AO353_26440 at 5796.292 kb on + strand at 5796.292 kb on + strand at 5796.292 kb on + strand at 5796.292 kb on + strand at 5796.293 kb on - strand at 5796.293 kb on - strand at 5796.311 kb on - strand at 5796.311 kb on - strand at 5796.311 kb on - strand at 5796.331 kb on + strand at 5796.332 kb on - strand at 5796.356 kb on + strand at 5796.356 kb on + strand at 5796.356 kb on + strand at 5796.357 kb on - strand at 5796.357 kb on - strand at 5796.413 kb on + strand at 5796.413 kb on + strand at 5796.413 kb on + strand at 5796.414 kb on - strand at 5796.414 kb on - strand at 5796.414 kb on - strand at 5796.424 kb on + strand at 5796.424 kb on + strand at 5796.424 kb on + strand at 5796.425 kb on - strand at 5796.425 kb on - strand at 5796.436 kb on + strand at 5796.436 kb on + strand at 5796.436 kb on + strand at 5796.437 kb on - strand at 5796.437 kb on - strand at 5796.437 kb on - strand at 5796.437 kb on - strand at 5796.452 kb on - strand at 5796.529 kb on + strand, within AO353_26445 at 5796.530 kb on - strand, within AO353_26445 at 5796.530 kb on - strand, within AO353_26445 at 5796.540 kb on - strand, within AO353_26445 at 5796.540 kb on - strand, within AO353_26445 at 5796.540 kb on - strand, within AO353_26445 at 5796.577 kb on + strand, within AO353_26445 at 5796.578 kb on - strand, within AO353_26445 at 5796.682 kb on + strand, within AO353_26445 at 5796.682 kb on + strand, within AO353_26445 at 5796.682 kb on + strand, within AO353_26445 at 5796.682 kb on + strand, within AO353_26445 at 5796.682 kb on + strand, within AO353_26445 at 5796.682 kb on + strand, within AO353_26445 at 5796.682 kb on + strand, within AO353_26445 at 5796.682 kb on + strand, within AO353_26445 at 5796.682 kb on + strand, within AO353_26445 at 5796.682 kb on + strand, within AO353_26445 at 5796.683 kb on - strand, within AO353_26445 at 5796.683 kb on - strand, within AO353_26445 at 5796.683 kb on - strand, within AO353_26445 at 5796.683 kb on - strand, within AO353_26445 at 5796.683 kb on - strand, within AO353_26445 at 5796.683 kb on - strand, within AO353_26445 at 5796.683 kb on - strand, within AO353_26445 at 5796.683 kb on - strand, within AO353_26445 at 5796.746 kb on - strand, within AO353_26445 at 5796.755 kb on - strand, within AO353_26445 at 5796.778 kb on + strand, within AO353_26445 at 5796.778 kb on + strand, within AO353_26445 at 5796.779 kb on - strand, within AO353_26445 at 5796.779 kb on - strand, within AO353_26445 at 5796.780 kb on + strand, within AO353_26445 at 5796.781 kb on - strand, within AO353_26445 at 5796.781 kb on - strand, within AO353_26445 at 5796.781 kb on - strand, within AO353_26445 at 5796.781 kb on - strand, within AO353_26445 at 5796.799 kb on + strand at 5796.799 kb on + strand at 5796.800 kb on - strand at 5796.800 kb on - strand at 5796.800 kb on - strand at 5796.800 kb on - strand at 5796.800 kb on - strand at 5796.800 kb on - strand at 5796.835 kb on + strand at 5796.835 kb on + strand at 5796.835 kb on + strand at 5796.835 kb on + strand at 5796.835 kb on + strand at 5796.836 kb on - strand at 5796.836 kb on - strand at 5796.836 kb on - strand at 5796.836 kb on - strand at 5796.836 kb on - strand at 5796.838 kb on + strand at 5796.838 kb on + strand at 5796.854 kb on + strand at 5796.854 kb on + strand at 5796.854 kb on + strand at 5796.854 kb on + strand at 5796.855 kb on - strand at 5796.855 kb on - strand at 5796.858 kb on + strand, within AO353_26450 at 5796.858 kb on + strand, within AO353_26450 at 5796.858 kb on + strand, within AO353_26450 at 5796.877 kb on + strand, within AO353_26450 at 5796.878 kb on - strand, within AO353_26450 at 5796.878 kb on - strand, within AO353_26450 at 5796.878 kb on - strand, within AO353_26450 at 5796.878 kb on - strand, within AO353_26450 at 5796.878 kb on - strand at 5796.878 kb on - strand, within AO353_26450 at 5796.895 kb on - strand, within AO353_26450 at 5796.949 kb on - strand, within AO353_26450 at 5797.049 kb on + strand at 5797.049 kb on + strand at 5797.049 kb on + strand at 5797.049 kb on + strand at 5797.050 kb on - strand at 5797.050 kb on - strand at 5797.050 kb on - strand at 5797.050 kb on - strand at 5797.057 kb on + strand at 5797.057 kb on + strand at 5797.098 kb on + strand at 5797.098 kb on + strand at 5797.098 kb on + strand at 5797.098 kb on + strand at 5797.099 kb on - strand at 5797.099 kb on - strand at 5797.099 kb on - strand at 5797.108 kb on + strand at 5797.164 kb on + strand at 5797.164 kb on + strand at 5797.164 kb on + strand at 5797.165 kb on - strand at 5797.165 kb on - strand at 5797.165 kb on - strand at 5797.165 kb on - strand at 5797.165 kb on - strand at 5797.165 kb on - strand at 5797.165 kb on - strand at 5797.185 kb on + strand at 5797.298 kb on + strand, within AO353_26455 at 5797.298 kb on + strand, within AO353_26455 at 5797.298 kb on + strand, within AO353_26455 at 5797.298 kb on + strand, within AO353_26455 at 5797.298 kb on + strand, within AO353_26455 at 5797.298 kb on + strand, within AO353_26455 at 5797.298 kb on + strand, within AO353_26455 at 5797.298 kb on + strand, within AO353_26455 at 5797.299 kb on - strand, within AO353_26455 at 5797.299 kb on - strand, within AO353_26455 at 5797.299 kb on - strand, within AO353_26455 at 5797.299 kb on - strand, within AO353_26455 at 5797.299 kb on - strand, within AO353_26455 at 5797.300 kb on - strand, within AO353_26455 at 5797.402 kb on + strand, within AO353_26455 at 5797.403 kb on - strand, within AO353_26455 at 5797.465 kb on + strand, within AO353_26455 at 5797.465 kb on + strand, within AO353_26455 at 5797.466 kb on - strand, within AO353_26455 at 5797.673 kb on + strand, within AO353_26455 at 5797.673 kb on + strand, within AO353_26455 at 5797.673 kb on + strand, within AO353_26455 at 5797.674 kb on - strand, within AO353_26455 at 5797.674 kb on - strand, within AO353_26455 at 5797.674 kb on - strand, within AO353_26455 at 5797.674 kb on - strand, within AO353_26455 at 5797.704 kb on - strand, within AO353_26455 at 5797.704 kb on - strand, within AO353_26455 at 5797.704 kb on - strand, within AO353_26455 at 5797.710 kb on + strand, within AO353_26455 at 5797.710 kb on + strand, within AO353_26455 at 5797.711 kb on - strand, within AO353_26455 at 5797.711 kb on - strand, within AO353_26455 at 5797.711 kb on - strand, within AO353_26455 at 5797.711 kb on - strand, within AO353_26455 at 5797.750 kb on + strand, within AO353_26455 at 5797.750 kb on + strand, within AO353_26455 at 5797.750 kb on + strand, within AO353_26455 at 5797.750 kb on + strand at 5797.783 kb on + strand, within AO353_26455 at 5797.784 kb on - strand, within AO353_26455 at 5797.870 kb on + strand, within AO353_26455 at 5797.870 kb on + strand, within AO353_26455 at 5797.870 kb on + strand, within AO353_26455 at 5797.871 kb on - strand at 5797.871 kb on - strand at 5797.889 kb on - strand at 5797.897 kb on - strand at 5797.964 kb on + strand at 5797.964 kb on + strand at 5797.979 kb on + strand at 5797.979 kb on + strand at 5797.979 kb on + strand at 5797.980 kb on - strand at 5797.980 kb on - strand at 5797.980 kb on - strand at 5797.980 kb on - strand at 5797.980 kb on - strand at 5797.994 kb on - strand at 5798.012 kb on + strand at 5798.012 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0025 mg/ml remove 5,795,860 + +0.6 5,795,902 + +0.3 5,795,902 + -0.9 5,795,902 + +0.6 5,795,940 + -0.3 5,795,940 + -1.0 5,795,941 - -1.3 5,795,941 - -2.7 5,795,941 - -0.0 5,795,941 - -0.4 5,795,998 + +0.7 5,795,998 + -1.7 5,795,999 - +0.2 5,795,999 - -0.7 5,796,128 - AO353_26440 0.44 +0.6 5,796,139 + AO353_26440 0.47 +0.3 5,796,140 - AO353_26440 0.47 +0.4 5,796,140 - AO353_26440 0.47 -1.4 5,796,140 - AO353_26440 0.47 -0.2 5,796,150 + AO353_26440 0.51 -2.5 5,796,151 - AO353_26440 0.51 +1.3 5,796,151 - AO353_26440 0.51 -1.7 5,796,151 - AO353_26440 0.51 -1.0 5,796,154 + AO353_26440 0.52 +1.3 5,796,292 + -2.7 5,796,292 + -0.1 5,796,292 + +1.3 5,796,292 + +1.6 5,796,293 - +0.8 5,796,293 - +1.0 5,796,311 - -0.3 5,796,311 - +0.7 5,796,311 - +2.3 5,796,331 + +0.3 5,796,332 - +0.7 5,796,356 + -0.1 5,796,356 + -0.0 5,796,356 + -0.7 5,796,357 - +1.1 5,796,357 - -0.5 5,796,413 + +0.9 5,796,413 + +0.9 5,796,413 + -0.6 5,796,414 - -1.5 5,796,414 - -1.3 5,796,414 - -0.3 5,796,424 + +0.6 5,796,424 + +0.4 5,796,424 + +1.9 5,796,425 - +0.1 5,796,425 - +0.2 5,796,436 + -1.1 5,796,436 + +0.3 5,796,436 + -0.7 5,796,437 - -1.7 5,796,437 - -0.6 5,796,437 - -0.4 5,796,437 - -1.1 5,796,452 - +0.2 5,796,529 + AO353_26445 0.27 -1.0 5,796,530 - AO353_26445 0.28 -2.7 5,796,530 - AO353_26445 0.28 +1.0 5,796,540 - AO353_26445 0.30 -1.5 5,796,540 - AO353_26445 0.30 -0.3 5,796,540 - AO353_26445 0.30 -0.8 5,796,577 + AO353_26445 0.39 +0.6 5,796,578 - AO353_26445 0.40 +0.6 5,796,682 + AO353_26445 0.65 -1.3 5,796,682 + AO353_26445 0.65 +0.4 5,796,682 + AO353_26445 0.65 -0.6 5,796,682 + AO353_26445 0.65 -0.7 5,796,682 + AO353_26445 0.65 -2.3 5,796,682 + AO353_26445 0.65 -0.7 5,796,682 + AO353_26445 0.65 -1.1 5,796,682 + AO353_26445 0.65 +0.9 5,796,682 + AO353_26445 0.65 +0.3 5,796,682 + AO353_26445 0.65 +1.4 5,796,683 - AO353_26445 0.65 +0.1 5,796,683 - AO353_26445 0.65 -1.7 5,796,683 - AO353_26445 0.65 -1.5 5,796,683 - AO353_26445 0.65 -1.0 5,796,683 - AO353_26445 0.65 +0.9 5,796,683 - AO353_26445 0.65 -0.4 5,796,683 - AO353_26445 0.65 +1.1 5,796,683 - AO353_26445 0.65 -1.3 5,796,746 - AO353_26445 0.81 +1.5 5,796,755 - AO353_26445 0.83 -0.1 5,796,778 + AO353_26445 0.89 +0.8 5,796,778 + AO353_26445 0.89 +0.2 5,796,779 - AO353_26445 0.89 +0.0 5,796,779 - AO353_26445 0.89 -0.1 5,796,780 + AO353_26445 0.89 +2.9 5,796,781 - AO353_26445 0.90 +2.3 5,796,781 - AO353_26445 0.90 +0.7 5,796,781 - AO353_26445 0.90 +0.7 5,796,781 - AO353_26445 0.90 +0.4 5,796,799 + +0.9 5,796,799 + +0.0 5,796,800 - +1.2 5,796,800 - -0.6 5,796,800 - +0.4 5,796,800 - +0.3 5,796,800 - +0.4 5,796,800 - -1.7 5,796,835 + -0.6 5,796,835 + +0.3 5,796,835 + +1.3 5,796,835 + +0.6 5,796,835 + -0.1 5,796,836 - +0.6 5,796,836 - +0.3 5,796,836 - +0.6 5,796,836 - +0.0 5,796,836 - +0.6 5,796,838 + -0.0 5,796,838 + +0.9 5,796,854 + +0.5 5,796,854 + -0.0 5,796,854 + -0.3 5,796,854 + -1.4 5,796,855 - +0.7 5,796,855 - -0.3 5,796,858 + AO353_26450 0.11 +0.6 5,796,858 + AO353_26450 0.11 +1.8 5,796,858 + AO353_26450 0.11 +0.4 5,796,877 + AO353_26450 0.22 -0.9 5,796,878 - AO353_26450 0.22 +0.2 5,796,878 - AO353_26450 0.22 +0.4 5,796,878 - AO353_26450 0.22 +0.7 5,796,878 - AO353_26450 0.22 -0.7 5,796,878 - +1.3 5,796,878 - AO353_26450 0.22 +0.7 5,796,895 - AO353_26450 0.32 +0.5 5,796,949 - AO353_26450 0.61 -1.1 5,797,049 + -0.0 5,797,049 + -0.0 5,797,049 + +0.1 5,797,049 + -1.0 5,797,050 - -0.2 5,797,050 - +1.0 5,797,050 - -1.7 5,797,050 - -0.3 5,797,057 + -2.5 5,797,057 + -0.4 5,797,098 + -0.1 5,797,098 + -0.7 5,797,098 + -0.8 5,797,098 + -1.7 5,797,099 - -0.6 5,797,099 - +0.1 5,797,099 - -0.5 5,797,108 + -0.3 5,797,164 + +0.1 5,797,164 + +0.3 5,797,164 + -0.0 5,797,165 - +1.9 5,797,165 - +0.1 5,797,165 - +0.7 5,797,165 - -1.1 5,797,165 - +0.6 5,797,165 - +0.2 5,797,165 - +1.0 5,797,185 + +2.6 5,797,298 + AO353_26455 0.23 +0.4 5,797,298 + AO353_26455 0.23 +0.3 5,797,298 + AO353_26455 0.23 +0.1 5,797,298 + AO353_26455 0.23 +0.6 5,797,298 + AO353_26455 0.23 -0.4 5,797,298 + AO353_26455 0.23 +0.3 5,797,298 + AO353_26455 0.23 -0.7 5,797,298 + AO353_26455 0.23 -0.0 5,797,299 - AO353_26455 0.23 -1.1 5,797,299 - AO353_26455 0.23 +0.2 5,797,299 - AO353_26455 0.23 +0.1 5,797,299 - AO353_26455 0.23 +0.6 5,797,299 - AO353_26455 0.23 -0.6 5,797,300 - AO353_26455 0.23 +0.4 5,797,402 + AO353_26455 0.35 -1.1 5,797,403 - AO353_26455 0.35 +0.5 5,797,465 + AO353_26455 0.43 -1.8 5,797,465 + AO353_26455 0.43 +0.7 5,797,466 - AO353_26455 0.43 +0.9 5,797,673 + AO353_26455 0.67 -0.3 5,797,673 + AO353_26455 0.67 +0.1 5,797,673 + AO353_26455 0.67 +0.6 5,797,674 - AO353_26455 0.67 +0.2 5,797,674 - AO353_26455 0.67 -0.6 5,797,674 - AO353_26455 0.67 -0.1 5,797,674 - AO353_26455 0.67 -0.4 5,797,704 - AO353_26455 0.71 +0.3 5,797,704 - AO353_26455 0.71 +0.6 5,797,704 - AO353_26455 0.71 -0.3 5,797,710 + AO353_26455 0.71 -0.0 5,797,710 + AO353_26455 0.71 -1.3 5,797,711 - AO353_26455 0.71 -1.4 5,797,711 - AO353_26455 0.71 +0.7 5,797,711 - AO353_26455 0.71 +0.9 5,797,711 - AO353_26455 0.71 -1.7 5,797,750 + AO353_26455 0.76 -0.7 5,797,750 + AO353_26455 0.76 -0.8 5,797,750 + AO353_26455 0.76 +0.1 5,797,750 + +1.0 5,797,783 + AO353_26455 0.80 +1.3 5,797,784 - AO353_26455 0.80 -0.0 5,797,870 + AO353_26455 0.90 +0.3 5,797,870 + AO353_26455 0.90 -0.3 5,797,870 + AO353_26455 0.90 -1.3 5,797,871 - -1.3 5,797,871 - +1.6 5,797,889 - -0.5 5,797,897 - +0.6 5,797,964 + -0.5 5,797,964 + -1.3 5,797,979 + -0.0 5,797,979 + +1.6 5,797,979 + +2.3 5,797,980 - -0.0 5,797,980 - +0.4 5,797,980 - +1.1 5,797,980 - -0.6 5,797,980 - -1.9 5,797,994 - +0.6 5,798,012 + -0.3 5,798,012 + +0.6
Or see this region's nucleotide sequence