Experiment: Chloramphenicol 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23415 and AO353_23420 are separated by 10 nucleotides AO353_23420 and AO353_23425 are separated by 37 nucleotides AO353_23425 and AO353_23430 are separated by 281 nucleotides AO353_23430 and AO353_23435 are separated by 2 nucleotides
AO353_23415: AO353_23415 - lysine transporter LysE, at 5,129,993 to 5,130,580
_23415
AO353_23420: AO353_23420 - AraC family transcriptional regulator, at 5,130,591 to 5,131,424
_23420
AO353_23425: AO353_23425 - 3-demethylubiquinone-9 3-methyltransferase, at 5,131,462 to 5,131,965
_23425
AO353_23430: AO353_23430 - (2Fe-2S)-binding protein, at 5,132,247 to 5,132,708
_23430
AO353_23435: AO353_23435 - twin-arginine translocation pathway signal protein, at 5,132,711 to 5,134,879
_23435
Position (kb) 5131
5132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5130.468 kb on - strand, within AO353_23415 at 5130.491 kb on + strand, within AO353_23415 at 5130.524 kb on - strand at 5130.578 kb on + strand at 5130.578 kb on + strand at 5130.578 kb on + strand at 5130.578 kb on + strand at 5130.579 kb on - strand at 5130.868 kb on + strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.012 kb on + strand, within AO353_23420 at 5131.012 kb on + strand, within AO353_23420 at 5131.012 kb on + strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.031 kb on + strand, within AO353_23420 at 5131.032 kb on - strand, within AO353_23420 at 5131.130 kb on + strand, within AO353_23420 at 5131.138 kb on + strand, within AO353_23420 at 5131.138 kb on + strand, within AO353_23420 at 5131.138 kb on + strand, within AO353_23420 at 5131.139 kb on - strand, within AO353_23420 at 5131.139 kb on - strand, within AO353_23420 at 5131.255 kb on + strand, within AO353_23420 at 5131.255 kb on + strand, within AO353_23420 at 5131.255 kb on + strand, within AO353_23420 at 5131.255 kb on + strand, within AO353_23420 at 5131.256 kb on - strand, within AO353_23420 at 5131.256 kb on - strand, within AO353_23420 at 5131.256 kb on - strand, within AO353_23420 at 5131.256 kb on - strand, within AO353_23420 at 5131.256 kb on - strand, within AO353_23420 at 5131.316 kb on - strand, within AO353_23420 at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.461 kb on - strand at 5131.461 kb on - strand at 5131.461 kb on - strand at 5131.461 kb on - strand at 5131.461 kb on - strand at 5131.463 kb on + strand at 5131.463 kb on + strand at 5131.463 kb on + strand at 5131.463 kb on + strand at 5131.463 kb on + strand at 5131.464 kb on - strand at 5131.464 kb on - strand at 5131.464 kb on - strand at 5131.464 kb on - strand at 5131.464 kb on - strand at 5131.464 kb on - strand at 5131.735 kb on - strand, within AO353_23425 at 5131.895 kb on + strand, within AO353_23425 at 5131.895 kb on + strand, within AO353_23425 at 5131.895 kb on + strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5132.000 kb on - strand at 5132.000 kb on - strand at 5132.000 kb on - strand at 5132.003 kb on - strand at 5132.007 kb on + strand at 5132.007 kb on + strand at 5132.007 kb on + strand at 5132.008 kb on - strand at 5132.008 kb on - strand at 5132.008 kb on - strand at 5132.008 kb on - strand at 5132.032 kb on - strand at 5132.058 kb on + strand at 5132.058 kb on + strand at 5132.058 kb on + strand at 5132.059 kb on - strand at 5132.059 kb on - strand at 5132.159 kb on - strand at 5132.159 kb on - strand at 5132.171 kb on - strand at 5132.187 kb on - strand at 5132.261 kb on + strand at 5132.261 kb on + strand at 5132.261 kb on + strand at 5132.261 kb on + strand at 5132.262 kb on - strand at 5132.318 kb on - strand, within AO353_23430 at 5132.318 kb on - strand, within AO353_23430 at 5132.636 kb on + strand, within AO353_23430 at 5132.636 kb on + strand, within AO353_23430 at 5132.636 kb on + strand, within AO353_23430 at 5132.637 kb on - strand, within AO353_23430 at 5132.637 kb on - strand, within AO353_23430 at 5132.637 kb on - strand, within AO353_23430
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0025 mg/ml remove 5,130,468 - AO353_23415 0.81 -0.3 5,130,491 + AO353_23415 0.85 -0.5 5,130,524 - +1.0 5,130,578 + +0.8 5,130,578 + +1.0 5,130,578 + -0.2 5,130,578 + -0.8 5,130,579 - +0.4 5,130,868 + AO353_23420 0.33 -0.3 5,130,869 - AO353_23420 0.33 +0.7 5,130,869 - AO353_23420 0.33 +0.1 5,130,869 - AO353_23420 0.33 -1.2 5,130,869 - AO353_23420 0.33 -0.3 5,130,869 - AO353_23420 0.33 +0.7 5,130,869 - AO353_23420 0.33 +0.8 5,131,005 + AO353_23420 0.50 +0.5 5,131,005 + AO353_23420 0.50 +1.3 5,131,005 + AO353_23420 0.50 +1.3 5,131,005 + AO353_23420 0.50 +0.6 5,131,005 + AO353_23420 0.50 +1.3 5,131,005 + AO353_23420 0.50 +0.3 5,131,005 + AO353_23420 0.50 -0.5 5,131,005 + AO353_23420 0.50 -1.2 5,131,006 - AO353_23420 0.50 -0.1 5,131,006 - AO353_23420 0.50 +0.0 5,131,006 - AO353_23420 0.50 +0.7 5,131,006 - AO353_23420 0.50 -0.7 5,131,006 - AO353_23420 0.50 +0.0 5,131,006 - AO353_23420 0.50 +0.7 5,131,006 - AO353_23420 0.50 +0.5 5,131,006 - AO353_23420 0.50 +0.4 5,131,006 - AO353_23420 0.50 -0.2 5,131,006 - AO353_23420 0.50 +0.3 5,131,012 + AO353_23420 0.50 +0.1 5,131,012 + AO353_23420 0.50 +0.2 5,131,012 + AO353_23420 0.50 +1.3 5,131,013 - AO353_23420 0.51 -0.2 5,131,013 - AO353_23420 0.51 -0.5 5,131,013 - AO353_23420 0.51 -0.8 5,131,013 - AO353_23420 0.51 -0.7 5,131,013 - AO353_23420 0.51 +1.0 5,131,013 - AO353_23420 0.51 +1.0 5,131,031 + AO353_23420 0.53 -0.1 5,131,032 - AO353_23420 0.53 -0.7 5,131,130 + AO353_23420 0.65 +0.1 5,131,138 + AO353_23420 0.66 +0.3 5,131,138 + AO353_23420 0.66 -0.2 5,131,138 + AO353_23420 0.66 -0.1 5,131,139 - AO353_23420 0.66 -0.0 5,131,139 - AO353_23420 0.66 -0.7 5,131,255 + AO353_23420 0.80 +1.3 5,131,255 + AO353_23420 0.80 +0.1 5,131,255 + AO353_23420 0.80 +1.0 5,131,255 + AO353_23420 0.80 -0.1 5,131,256 - AO353_23420 0.80 -0.4 5,131,256 - AO353_23420 0.80 +0.1 5,131,256 - AO353_23420 0.80 -0.7 5,131,256 - AO353_23420 0.80 -0.5 5,131,256 - AO353_23420 0.80 +0.3 5,131,316 - AO353_23420 0.87 +0.1 5,131,460 + +0.3 5,131,460 + +0.4 5,131,460 + -0.7 5,131,460 + -1.5 5,131,460 + +0.2 5,131,460 + +0.7 5,131,460 + -0.4 5,131,460 + -0.8 5,131,460 + -0.3 5,131,461 - -0.0 5,131,461 - -1.9 5,131,461 - +0.5 5,131,461 - -0.3 5,131,461 - +0.9 5,131,463 + -0.5 5,131,463 + +0.3 5,131,463 + +1.8 5,131,463 + -0.1 5,131,463 + +1.3 5,131,464 - -0.5 5,131,464 - -0.1 5,131,464 - +0.4 5,131,464 - +0.6 5,131,464 - +0.3 5,131,464 - -0.3 5,131,735 - AO353_23425 0.54 -0.0 5,131,895 + AO353_23425 0.86 -1.0 5,131,895 + AO353_23425 0.86 -1.0 5,131,895 + AO353_23425 0.86 -0.0 5,131,896 - AO353_23425 0.86 -1.9 5,131,896 - AO353_23425 0.86 -0.5 5,131,896 - AO353_23425 0.86 +1.0 5,131,896 - AO353_23425 0.86 -1.7 5,131,896 - AO353_23425 0.86 -0.2 5,131,896 - AO353_23425 0.86 -1.7 5,131,999 + -0.3 5,131,999 + -0.7 5,131,999 + +0.5 5,131,999 + +0.6 5,131,999 + -0.1 5,131,999 + -0.6 5,131,999 + +1.3 5,131,999 + -1.3 5,132,000 - +0.1 5,132,000 - -1.0 5,132,000 - -1.7 5,132,003 - +0.7 5,132,007 + +0.4 5,132,007 + -0.1 5,132,007 + -0.3 5,132,008 - -1.5 5,132,008 - -0.1 5,132,008 - +0.2 5,132,008 - +0.1 5,132,032 - +0.4 5,132,058 + -0.4 5,132,058 + -0.2 5,132,058 + +0.5 5,132,059 - -0.3 5,132,059 - -2.0 5,132,159 - -0.7 5,132,159 - -0.1 5,132,171 - +0.3 5,132,187 - -1.0 5,132,261 + -0.5 5,132,261 + -0.4 5,132,261 + -1.5 5,132,261 + -1.5 5,132,262 - +1.3 5,132,318 - AO353_23430 0.15 +0.7 5,132,318 - AO353_23430 0.15 -1.6 5,132,636 + AO353_23430 0.84 -1.0 5,132,636 + AO353_23430 0.84 +1.3 5,132,636 + AO353_23430 0.84 -0.7 5,132,637 - AO353_23430 0.84 -1.2 5,132,637 - AO353_23430 0.84 -0.5 5,132,637 - AO353_23430 0.84 -0.7
Or see this region's nucleotide sequence