Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17380

Experiment: Chloramphenicol 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17375 and AO353_17380 are separated by 240 nucleotidesAO353_17380 and AO353_17385 are separated by 101 nucleotidesAO353_17385 and AO353_17390 are separated by 28 nucleotides AO353_17375: AO353_17375 - beta-D-glucoside glucohydrolase, at 3,838,372 to 3,840,663 _17375 AO353_17380: AO353_17380 - hypothetical protein, at 3,840,904 to 3,841,512 _17380 AO353_17385: AO353_17385 - methanol dehydrogenase, at 3,841,614 to 3,842,366 _17385 AO353_17390: AO353_17390 - hypothetical protein, at 3,842,395 to 3,843,012 _17390 Position (kb) 3840 3841 3842Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3839.972 kb on + strand, within AO353_17375at 3839.972 kb on + strand, within AO353_17375at 3839.972 kb on + strand, within AO353_17375at 3839.972 kb on + strand, within AO353_17375at 3839.973 kb on - strand, within AO353_17375at 3839.973 kb on - strand, within AO353_17375at 3839.981 kb on + strand, within AO353_17375at 3839.981 kb on + strand, within AO353_17375at 3839.981 kb on + strand, within AO353_17375at 3839.982 kb on + strand, within AO353_17375at 3839.982 kb on - strand, within AO353_17375at 3839.982 kb on - strand, within AO353_17375at 3839.982 kb on - strand, within AO353_17375at 3839.982 kb on - strand, within AO353_17375at 3839.982 kb on - strand, within AO353_17375at 3839.982 kb on - strand, within AO353_17375at 3840.014 kb on + strand, within AO353_17375at 3840.014 kb on + strand, within AO353_17375at 3840.015 kb on - strand, within AO353_17375at 3840.015 kb on - strand, within AO353_17375at 3840.015 kb on - strand, within AO353_17375at 3840.042 kb on - strand, within AO353_17375at 3840.104 kb on + strand, within AO353_17375at 3840.105 kb on - strand, within AO353_17375at 3840.105 kb on - strand, within AO353_17375at 3840.105 kb on - strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.143 kb on + strand, within AO353_17375at 3840.144 kb on - strand, within AO353_17375at 3840.144 kb on - strand, within AO353_17375at 3840.144 kb on - strand, within AO353_17375at 3840.144 kb on - strand, within AO353_17375at 3840.144 kb on - strand, within AO353_17375at 3840.144 kb on - strand, within AO353_17375at 3840.144 kb on - strand, within AO353_17375at 3840.351 kb on - strand, within AO353_17375at 3840.667 kb on + strandat 3840.667 kb on + strandat 3840.667 kb on + strandat 3840.667 kb on + strandat 3840.668 kb on - strandat 3840.668 kb on - strandat 3840.668 kb on - strandat 3840.668 kb on - strandat 3840.668 kb on - strandat 3840.668 kb on - strandat 3840.748 kb on + strandat 3840.749 kb on - strandat 3840.749 kb on - strandat 3840.765 kb on + strandat 3840.765 kb on + strandat 3840.765 kb on + strandat 3840.765 kb on + strandat 3840.792 kb on + strandat 3840.832 kb on + strandat 3840.832 kb on + strandat 3840.832 kb on + strandat 3840.832 kb on + strandat 3840.833 kb on - strandat 3840.869 kb on - strandat 3840.869 kb on - strandat 3840.869 kb on - strandat 3840.869 kb on - strandat 3840.869 kb on - strandat 3840.869 kb on - strandat 3840.911 kb on + strandat 3840.911 kb on + strandat 3840.912 kb on - strandat 3840.912 kb on - strandat 3840.941 kb on + strandat 3840.941 kb on + strandat 3840.941 kb on + strandat 3840.941 kb on + strandat 3840.941 kb on + strandat 3840.941 kb on + strandat 3840.941 kb on + strandat 3840.941 kb on + strandat 3840.942 kb on - strandat 3840.942 kb on - strandat 3840.942 kb on - strandat 3840.942 kb on - strandat 3840.942 kb on - strandat 3840.942 kb on - strandat 3840.947 kb on + strandat 3840.947 kb on + strandat 3840.947 kb on + strandat 3840.948 kb on - strandat 3840.948 kb on - strandat 3840.948 kb on - strandat 3840.948 kb on - strandat 3840.948 kb on - strandat 3841.048 kb on + strand, within AO353_17380at 3841.384 kb on + strand, within AO353_17380at 3841.384 kb on + strand, within AO353_17380at 3841.384 kb on + strand, within AO353_17380at 3841.384 kb on + strand, within AO353_17380at 3841.384 kb on + strand, within AO353_17380at 3841.385 kb on - strand, within AO353_17380at 3841.385 kb on - strand, within AO353_17380at 3841.385 kb on - strand, within AO353_17380at 3841.385 kb on - strand, within AO353_17380at 3841.435 kb on + strand, within AO353_17380at 3841.436 kb on - strand, within AO353_17380at 3841.436 kb on - strand, within AO353_17380at 3841.845 kb on + strand, within AO353_17385at 3841.845 kb on + strand, within AO353_17385at 3841.845 kb on + strand, within AO353_17385at 3841.845 kb on + strand, within AO353_17385at 3841.845 kb on + strand, within AO353_17385at 3841.845 kb on + strand, within AO353_17385at 3841.845 kb on + strand, within AO353_17385at 3841.845 kb on + strand, within AO353_17385at 3841.846 kb on - strand, within AO353_17385at 3841.846 kb on - strand, within AO353_17385at 3841.846 kb on - strand, within AO353_17385at 3841.846 kb on - strand, within AO353_17385at 3841.846 kb on - strand, within AO353_17385at 3841.846 kb on - strand, within AO353_17385at 3841.846 kb on - strand, within AO353_17385at 3841.846 kb on - strand, within AO353_17385at 3842.081 kb on - strand, within AO353_17385at 3842.116 kb on + strand, within AO353_17385at 3842.116 kb on + strand, within AO353_17385at 3842.116 kb on + strand, within AO353_17385at 3842.116 kb on + strand, within AO353_17385at 3842.116 kb on + strand, within AO353_17385at 3842.116 kb on + strand, within AO353_17385at 3842.116 kb on + strand, within AO353_17385at 3842.116 kb on + strand, within AO353_17385at 3842.117 kb on - strand, within AO353_17385at 3842.117 kb on - strand, within AO353_17385at 3842.117 kb on - strand, within AO353_17385at 3842.117 kb on - strand, within AO353_17385at 3842.117 kb on - strand, within AO353_17385at 3842.117 kb on - strand, within AO353_17385at 3842.117 kb on - strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.118 kb on + strand, within AO353_17385at 3842.119 kb on - strand, within AO353_17385at 3842.119 kb on - strand, within AO353_17385at 3842.119 kb on - strand, within AO353_17385at 3842.119 kb on - strand, within AO353_17385at 3842.119 kb on - strand, within AO353_17385at 3842.119 kb on - strand, within AO353_17385at 3842.119 kb on - strand, within AO353_17385at 3842.119 kb on - strand, within AO353_17385at 3842.119 kb on - strand, within AO353_17385at 3842.119 kb on - strand, within AO353_17385at 3842.171 kb on - strand, within AO353_17385at 3842.171 kb on - strand, within AO353_17385at 3842.171 kb on - strand, within AO353_17385at 3842.171 kb on - strand, within AO353_17385at 3842.171 kb on - strand, within AO353_17385at 3842.171 kb on - strand, within AO353_17385at 3842.171 kb on - strand, within AO353_17385at 3842.180 kb on - strand, within AO353_17385at 3842.196 kb on - strand, within AO353_17385at 3842.210 kb on + strand, within AO353_17385at 3842.210 kb on + strand, within AO353_17385at 3842.210 kb on + strand, within AO353_17385at 3842.210 kb on + strand, within AO353_17385at 3842.211 kb on - strand, within AO353_17385at 3842.211 kb on - strand, within AO353_17385at 3842.367 kb on + strandat 3842.373 kb on + strandat 3842.374 kb on - strandat 3842.374 kb on - strandat 3842.402 kb on + strandat 3842.512 kb on + strand, within AO353_17390at 3842.512 kb on + strand, within AO353_17390at 3842.512 kb on + strand, within AO353_17390at 3842.512 kb on + strand, within AO353_17390at 3842.512 kb on + strand, within AO353_17390at 3842.512 kb on + strand, within AO353_17390at 3842.512 kb on + strand, within AO353_17390at 3842.512 kb on + strand, within AO353_17390at 3842.512 kb on + strand, within AO353_17390at 3842.512 kb on + strand, within AO353_17390at 3842.512 kb on + strand, within AO353_17390at 3842.512 kb on + strand, within AO353_17390

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0025 mg/ml
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3,839,972 + AO353_17375 0.70 -0.3
3,839,972 + AO353_17375 0.70 +0.4
3,839,972 + AO353_17375 0.70 -0.3
3,839,972 + AO353_17375 0.70 +0.6
3,839,973 - AO353_17375 0.70 -0.1
3,839,973 - AO353_17375 0.70 +0.5
3,839,981 + AO353_17375 0.70 +0.3
3,839,981 + AO353_17375 0.70 -0.3
3,839,981 + AO353_17375 0.70 +0.0
3,839,982 + AO353_17375 0.70 +0.0
3,839,982 - AO353_17375 0.70 -1.1
3,839,982 - AO353_17375 0.70 +1.0
3,839,982 - AO353_17375 0.70 -1.3
3,839,982 - AO353_17375 0.70 -0.3
3,839,982 - AO353_17375 0.70 +1.5
3,839,982 - AO353_17375 0.70 -0.3
3,840,014 + AO353_17375 0.72 -0.3
3,840,014 + AO353_17375 0.72 -0.1
3,840,015 - AO353_17375 0.72 +0.6
3,840,015 - AO353_17375 0.72 +0.5
3,840,015 - AO353_17375 0.72 -2.3
3,840,042 - AO353_17375 0.73 -0.1
3,840,104 + AO353_17375 0.76 -1.3
3,840,105 - AO353_17375 0.76 +0.4
3,840,105 - AO353_17375 0.76 -1.8
3,840,105 - AO353_17375 0.76 -1.0
3,840,143 + AO353_17375 0.77 +0.4
3,840,143 + AO353_17375 0.77 +0.3
3,840,143 + AO353_17375 0.77 +0.6
3,840,143 + AO353_17375 0.77 +0.2
3,840,143 + AO353_17375 0.77 +0.7
3,840,143 + AO353_17375 0.77 +0.5
3,840,143 + AO353_17375 0.77 +0.0
3,840,143 + AO353_17375 0.77 -0.3
3,840,143 + AO353_17375 0.77 -0.7
3,840,143 + AO353_17375 0.77 +0.9
3,840,143 + AO353_17375 0.77 +2.4
3,840,143 + AO353_17375 0.77 -1.0
3,840,143 + AO353_17375 0.77 +0.9
3,840,143 + AO353_17375 0.77 +1.3
3,840,144 - AO353_17375 0.77 +0.9
3,840,144 - AO353_17375 0.77 -1.5
3,840,144 - AO353_17375 0.77 +0.0
3,840,144 - AO353_17375 0.77 -1.0
3,840,144 - AO353_17375 0.77 -0.6
3,840,144 - AO353_17375 0.77 -0.6
3,840,144 - AO353_17375 0.77 +0.2
3,840,351 - AO353_17375 0.86 -0.3
3,840,667 + +0.1
3,840,667 + -0.1
3,840,667 + +1.1
3,840,667 + +1.0
3,840,668 - -0.4
3,840,668 - -0.2
3,840,668 - +0.3
3,840,668 - -0.6
3,840,668 - +1.1
3,840,668 - -2.0
3,840,748 + +0.4
3,840,749 - -0.8
3,840,749 - -0.1
3,840,765 + +0.2
3,840,765 + +1.0
3,840,765 + +1.9
3,840,765 + -0.8
3,840,792 + -2.5
3,840,832 + -0.6
3,840,832 + -0.7
3,840,832 + -1.1
3,840,832 + -1.6
3,840,833 - +0.4
3,840,869 - -0.0
3,840,869 - +1.9
3,840,869 - -1.6
3,840,869 - +0.0
3,840,869 - -0.0
3,840,869 - +0.9
3,840,911 + +1.1
3,840,911 + -1.3
3,840,912 - +0.3
3,840,912 - +0.9
3,840,941 + -1.4
3,840,941 + -2.2
3,840,941 + +0.0
3,840,941 + -1.6
3,840,941 + -0.7
3,840,941 + +1.9
3,840,941 + +2.9
3,840,941 + +0.2
3,840,942 - -0.3
3,840,942 - -1.1
3,840,942 - +1.0
3,840,942 - -0.3
3,840,942 - +0.4
3,840,942 - +0.9
3,840,947 + +0.0
3,840,947 + -0.9
3,840,947 + -0.0
3,840,948 - -0.9
3,840,948 - -1.1
3,840,948 - +0.6
3,840,948 - +0.6
3,840,948 - -0.5
3,841,048 + AO353_17380 0.24 +0.5
3,841,384 + AO353_17380 0.79 -0.2
3,841,384 + AO353_17380 0.79 -0.7
3,841,384 + AO353_17380 0.79 +0.0
3,841,384 + AO353_17380 0.79 +0.5
3,841,384 + AO353_17380 0.79 -1.0
3,841,385 - AO353_17380 0.79 -1.6
3,841,385 - AO353_17380 0.79 -0.3
3,841,385 - AO353_17380 0.79 -1.1
3,841,385 - AO353_17380 0.79 -2.3
3,841,435 + AO353_17380 0.87 -1.1
3,841,436 - AO353_17380 0.87 -0.4
3,841,436 - AO353_17380 0.87 -1.0
3,841,845 + AO353_17385 0.31 -0.3
3,841,845 + AO353_17385 0.31 +0.1
3,841,845 + AO353_17385 0.31 +0.3
3,841,845 + AO353_17385 0.31 -0.3
3,841,845 + AO353_17385 0.31 -0.0
3,841,845 + AO353_17385 0.31 +0.1
3,841,845 + AO353_17385 0.31 +1.2
3,841,845 + AO353_17385 0.31 -0.7
3,841,846 - AO353_17385 0.31 -1.7
3,841,846 - AO353_17385 0.31 -0.7
3,841,846 - AO353_17385 0.31 +0.5
3,841,846 - AO353_17385 0.31 -0.5
3,841,846 - AO353_17385 0.31 -0.0
3,841,846 - AO353_17385 0.31 -0.5
3,841,846 - AO353_17385 0.31 -0.8
3,841,846 - AO353_17385 0.31 +0.2
3,842,081 - AO353_17385 0.62 +0.7
3,842,116 + AO353_17385 0.67 -0.4
3,842,116 + AO353_17385 0.67 +1.3
3,842,116 + AO353_17385 0.67 -1.0
3,842,116 + AO353_17385 0.67 -0.9
3,842,116 + AO353_17385 0.67 +0.7
3,842,116 + AO353_17385 0.67 +0.9
3,842,116 + AO353_17385 0.67 -0.6
3,842,116 + AO353_17385 0.67 +0.1
3,842,117 - AO353_17385 0.67 +1.3
3,842,117 - AO353_17385 0.67 -1.0
3,842,117 - AO353_17385 0.67 -0.3
3,842,117 - AO353_17385 0.67 +1.6
3,842,117 - AO353_17385 0.67 -0.6
3,842,117 - AO353_17385 0.67 -2.5
3,842,117 - AO353_17385 0.67 +0.1
3,842,118 + AO353_17385 0.67 +0.3
3,842,118 + AO353_17385 0.67 +0.0
3,842,118 + AO353_17385 0.67 -1.0
3,842,118 + AO353_17385 0.67 -0.5
3,842,118 + AO353_17385 0.67 +1.7
3,842,118 + AO353_17385 0.67 +0.5
3,842,118 + AO353_17385 0.67 -0.0
3,842,118 + AO353_17385 0.67 +0.5
3,842,118 + AO353_17385 0.67 +1.4
3,842,118 + AO353_17385 0.67 -0.4
3,842,118 + AO353_17385 0.67 +0.4
3,842,118 + AO353_17385 0.67 -0.5
3,842,118 + AO353_17385 0.67 -0.0
3,842,118 + AO353_17385 0.67 -1.5
3,842,118 + AO353_17385 0.67 -0.0
3,842,118 + AO353_17385 0.67 +0.5
3,842,119 - AO353_17385 0.67 -0.5
3,842,119 - AO353_17385 0.67 -0.1
3,842,119 - AO353_17385 0.67 +1.4
3,842,119 - AO353_17385 0.67 +0.3
3,842,119 - AO353_17385 0.67 -1.7
3,842,119 - AO353_17385 0.67 -1.3
3,842,119 - AO353_17385 0.67 -0.8
3,842,119 - AO353_17385 0.67 +0.1
3,842,119 - AO353_17385 0.67 +0.8
3,842,119 - AO353_17385 0.67 -0.6
3,842,171 - AO353_17385 0.74 +0.8
3,842,171 - AO353_17385 0.74 -0.6
3,842,171 - AO353_17385 0.74 +0.5
3,842,171 - AO353_17385 0.74 -0.3
3,842,171 - AO353_17385 0.74 -1.3
3,842,171 - AO353_17385 0.74 -0.3
3,842,171 - AO353_17385 0.74 -0.5
3,842,180 - AO353_17385 0.75 -2.5
3,842,196 - AO353_17385 0.77 -0.5
3,842,210 + AO353_17385 0.79 -1.6
3,842,210 + AO353_17385 0.79 -0.1
3,842,210 + AO353_17385 0.79 +0.3
3,842,210 + AO353_17385 0.79 +0.3
3,842,211 - AO353_17385 0.79 -0.1
3,842,211 - AO353_17385 0.79 -0.0
3,842,367 + +0.3
3,842,373 + -0.3
3,842,374 - -1.7
3,842,374 - -0.3
3,842,402 + +0.2
3,842,512 + AO353_17390 0.19 +0.5
3,842,512 + AO353_17390 0.19 +0.1
3,842,512 + AO353_17390 0.19 -0.7
3,842,512 + AO353_17390 0.19 +0.6
3,842,512 + AO353_17390 0.19 -1.0
3,842,512 + AO353_17390 0.19 +0.0
3,842,512 + AO353_17390 0.19 +0.1
3,842,512 + AO353_17390 0.19 -0.1
3,842,512 + AO353_17390 0.19 -0.2
3,842,512 + AO353_17390 0.19 +0.9
3,842,512 + AO353_17390 0.19 +1.3
3,842,512 + AO353_17390 0.19 -0.1

Or see this region's nucleotide sequence