Experiment: Chloramphenicol 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06715 and AO353_06720 overlap by 4 nucleotides AO353_06720 and AO353_06725 are separated by 128 nucleotides AO353_06725 and AO353_06730 overlap by 4 nucleotides
AO353_06715: AO353_06715 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 1,494,652 to 1,495,785
_06715
AO353_06720: AO353_06720 - NrdR family transcriptional regulator, at 1,495,782 to 1,496,246
_06720
AO353_06725: AO353_06725 - hypothetical protein, at 1,496,375 to 1,496,836
_06725
AO353_06730: AO353_06730 - methyltransferase, at 1,496,833 to 1,497,489
_06730
Position (kb)
1495
1496
1497 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1495.746 kb on - strand at 1495.746 kb on - strand at 1495.746 kb on - strand at 1495.746 kb on - strand at 1495.746 kb on - strand at 1495.778 kb on - strand at 1495.778 kb on - strand at 1495.856 kb on - strand, within AO353_06720 at 1495.876 kb on + strand, within AO353_06720 at 1495.877 kb on - strand, within AO353_06720 at 1495.877 kb on - strand, within AO353_06720 at 1495.877 kb on - strand, within AO353_06720 at 1496.308 kb on + strand at 1496.309 kb on - strand at 1496.322 kb on + strand at 1496.322 kb on + strand at 1496.322 kb on + strand at 1496.322 kb on + strand at 1496.322 kb on + strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.323 kb on - strand at 1496.333 kb on + strand at 1496.333 kb on + strand at 1496.334 kb on - strand at 1496.334 kb on - strand at 1496.334 kb on - strand at 1496.397 kb on + strand at 1496.397 kb on + strand at 1496.397 kb on + strand at 1496.398 kb on - strand at 1496.398 kb on - strand at 1496.398 kb on - strand at 1496.398 kb on - strand at 1496.398 kb on - strand at 1496.428 kb on + strand, within AO353_06725 at 1496.428 kb on + strand, within AO353_06725 at 1496.428 kb on + strand, within AO353_06725 at 1496.429 kb on - strand, within AO353_06725 at 1496.528 kb on + strand, within AO353_06725 at 1496.864 kb on + strand at 1496.865 kb on - strand at 1497.004 kb on + strand, within AO353_06730 at 1497.004 kb on + strand, within AO353_06730 at 1497.005 kb on - strand, within AO353_06730 at 1497.005 kb on - strand, within AO353_06730 at 1497.005 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730 at 1497.230 kb on - strand, within AO353_06730
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0025 mg/ml remove 1,495,746 - -0.4 1,495,746 - +1.1 1,495,746 - -1.0 1,495,746 - +0.9 1,495,746 - -0.5 1,495,778 - -0.7 1,495,778 - +0.7 1,495,856 - AO353_06720 0.16 -0.5 1,495,876 + AO353_06720 0.20 -1.6 1,495,877 - AO353_06720 0.20 -0.4 1,495,877 - AO353_06720 0.20 +2.7 1,495,877 - AO353_06720 0.20 +0.4 1,496,308 + +1.0 1,496,309 - -0.0 1,496,322 + +0.3 1,496,322 + +0.5 1,496,322 + +1.8 1,496,322 + -1.7 1,496,322 + -1.4 1,496,323 - +1.5 1,496,323 - +0.3 1,496,323 - -0.1 1,496,323 - +0.1 1,496,323 - +0.8 1,496,323 - -0.8 1,496,323 - +0.8 1,496,323 - +0.9 1,496,323 - -1.1 1,496,323 - -1.2 1,496,333 + +0.1 1,496,333 + -0.5 1,496,334 - -0.3 1,496,334 - -1.0 1,496,334 - +0.1 1,496,397 + +0.9 1,496,397 + -0.5 1,496,397 + -0.4 1,496,398 - -0.7 1,496,398 - -0.3 1,496,398 - +0.3 1,496,398 - -0.3 1,496,398 - -0.6 1,496,428 + AO353_06725 0.11 +1.0 1,496,428 + AO353_06725 0.11 +0.3 1,496,428 + AO353_06725 0.11 -0.4 1,496,429 - AO353_06725 0.12 -2.1 1,496,528 + AO353_06725 0.33 +0.9 1,496,864 + -2.2 1,496,865 - -0.6 1,497,004 + AO353_06730 0.26 -1.0 1,497,004 + AO353_06730 0.26 -1.0 1,497,005 - AO353_06730 0.26 -0.1 1,497,005 - AO353_06730 0.26 +1.0 1,497,005 - AO353_06730 0.26 -0.1 1,497,230 - AO353_06730 0.60 +0.3 1,497,230 - AO353_06730 0.60 -1.2 1,497,230 - AO353_06730 0.60 +0.1 1,497,230 - AO353_06730 0.60 +0.1
Or see this region's nucleotide sequence