Experiment: Chloramphenicol 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03395 and AO353_03400 are separated by 117 nucleotides AO353_03400 and AO353_03405 are separated by 130 nucleotides
AO353_03395: AO353_03395 - sugar ABC transporter substrate-binding protein, at 722,648 to 723,955
_03395
AO353_03400: AO353_03400 - D-mannose isomerase (EC 5.3.1.7) <small>(from data)</small>, at 724,073 to 725,332
_03400
AO353_03405: AO353_03405 - histidine kinase, at 725,463 to 726,926
_03405
Position (kb) 724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2 at 723.075 kb on + strand, within AO353_03395 at 723.076 kb on - strand, within AO353_03395 at 723.076 kb on - strand, within AO353_03395 at 723.076 kb on - strand, within AO353_03395 at 723.213 kb on + strand, within AO353_03395 at 723.213 kb on + strand, within AO353_03395 at 723.213 kb on + strand, within AO353_03395 at 723.304 kb on - strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.423 kb on + strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.424 kb on - strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.531 kb on + strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.532 kb on - strand, within AO353_03395 at 723.543 kb on + strand, within AO353_03395 at 723.544 kb on - strand, within AO353_03395 at 723.716 kb on + strand, within AO353_03395 at 723.716 kb on + strand, within AO353_03395 at 723.717 kb on - strand, within AO353_03395 at 723.717 kb on - strand, within AO353_03395 at 723.717 kb on - strand, within AO353_03395 at 723.957 kb on + strand at 723.957 kb on + strand at 723.957 kb on + strand at 723.957 kb on + strand at 723.957 kb on + strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.958 kb on - strand at 723.963 kb on + strand at 723.963 kb on + strand at 723.963 kb on + strand at 723.963 kb on + strand at 723.964 kb on - strand at 723.964 kb on - strand at 723.978 kb on + strand at 723.978 kb on + strand at 723.978 kb on + strand at 723.978 kb on + strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 724.017 kb on - strand at 724.025 kb on + strand at 724.025 kb on + strand at 724.025 kb on + strand at 724.025 kb on + strand at 724.026 kb on - strand at 724.026 kb on - strand at 724.026 kb on - strand at 724.074 kb on + strand at 724.074 kb on + strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.075 kb on - strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.078 kb on + strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.079 kb on - strand at 724.082 kb on + strand at 724.082 kb on + strand at 724.083 kb on - strand at 724.083 kb on - strand at 724.302 kb on + strand, within AO353_03400 at 724.303 kb on - strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.413 kb on + strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.414 kb on - strand, within AO353_03400 at 724.587 kb on + strand, within AO353_03400 at 724.587 kb on + strand, within AO353_03400 at 724.588 kb on - strand, within AO353_03400 at 724.588 kb on - strand, within AO353_03400 at 724.623 kb on + strand, within AO353_03400 at 724.624 kb on - strand, within AO353_03400 at 724.837 kb on + strand, within AO353_03400 at 724.838 kb on - strand, within AO353_03400 at 724.980 kb on + strand, within AO353_03400 at 724.980 kb on + strand, within AO353_03400 at 724.981 kb on - strand, within AO353_03400 at 724.981 kb on - strand, within AO353_03400 at 725.352 kb on + strand at 725.352 kb on + strand at 725.353 kb on - strand at 725.369 kb on + strand at 725.370 kb on - strand at 725.411 kb on + strand at 725.411 kb on + strand at 725.412 kb on - strand at 725.412 kb on - strand at 725.412 kb on - strand at 725.476 kb on - strand at 725.541 kb on - strand at 725.675 kb on + strand, within AO353_03405 at 725.675 kb on + strand, within AO353_03405 at 725.722 kb on + strand, within AO353_03405 at 725.842 kb on + strand, within AO353_03405 at 725.842 kb on + strand, within AO353_03405 at 725.843 kb on - strand, within AO353_03405 at 725.865 kb on + strand, within AO353_03405 at 725.865 kb on + strand, within AO353_03405 at 725.866 kb on - strand, within AO353_03405 at 726.113 kb on + strand, within AO353_03405 at 726.114 kb on - strand, within AO353_03405 at 726.251 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.329 kb on + strand, within AO353_03405 at 726.331 kb on + strand, within AO353_03405 at 726.332 kb on - strand, within AO353_03405
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0025 mg/ml remove 723,075 + AO353_03395 0.33 -0.6 723,076 - AO353_03395 0.33 +0.4 723,076 - AO353_03395 0.33 +0.7 723,076 - AO353_03395 0.33 +0.4 723,213 + AO353_03395 0.43 +0.0 723,213 + AO353_03395 0.43 -0.1 723,213 + AO353_03395 0.43 +0.4 723,304 - AO353_03395 0.50 -0.3 723,423 + AO353_03395 0.59 -0.7 723,423 + AO353_03395 0.59 +1.0 723,423 + AO353_03395 0.59 +0.6 723,423 + AO353_03395 0.59 +0.3 723,423 + AO353_03395 0.59 -1.5 723,424 - AO353_03395 0.59 +0.5 723,424 - AO353_03395 0.59 +0.7 723,424 - AO353_03395 0.59 +0.4 723,424 - AO353_03395 0.59 -0.3 723,424 - AO353_03395 0.59 -0.3 723,424 - AO353_03395 0.59 -0.1 723,531 + AO353_03395 0.68 -1.0 723,531 + AO353_03395 0.68 -0.3 723,531 + AO353_03395 0.68 -0.6 723,531 + AO353_03395 0.68 -0.5 723,531 + AO353_03395 0.68 +1.9 723,532 - AO353_03395 0.68 +0.5 723,532 - AO353_03395 0.68 +0.3 723,532 - AO353_03395 0.68 -1.1 723,532 - AO353_03395 0.68 -0.7 723,532 - AO353_03395 0.68 +0.4 723,532 - AO353_03395 0.68 +1.6 723,543 + AO353_03395 0.68 -0.7 723,544 - AO353_03395 0.69 +0.7 723,716 + AO353_03395 0.82 -0.1 723,716 + AO353_03395 0.82 +1.0 723,717 - AO353_03395 0.82 -0.5 723,717 - AO353_03395 0.82 +0.2 723,717 - AO353_03395 0.82 -0.6 723,957 + -1.8 723,957 + -0.3 723,957 + +0.3 723,957 + -0.1 723,957 + +0.0 723,958 - +0.5 723,958 - -1.1 723,958 - +0.0 723,958 - -0.6 723,958 - +0.6 723,958 - -0.0 723,963 + -0.6 723,963 + -0.2 723,963 + +0.2 723,963 + +0.5 723,964 - -0.1 723,964 - +0.6 723,978 + -0.1 723,978 + -0.8 723,978 + +0.7 723,978 + +0.7 723,979 - -0.4 723,979 - -0.4 723,979 - +0.0 723,979 - -1.0 723,979 - +0.2 723,979 - +1.1 723,979 - +0.7 724,017 - +1.1 724,025 + -0.7 724,025 + -0.6 724,025 + -1.1 724,025 + -0.0 724,026 - +1.4 724,026 - +0.7 724,026 - +0.4 724,074 + -1.0 724,074 + +0.4 724,075 - +0.9 724,075 - +1.4 724,075 - -1.0 724,075 - -0.1 724,075 - -1.5 724,078 + -0.6 724,078 + +1.6 724,078 + +0.7 724,078 + -1.0 724,078 + -0.2 724,078 + -1.6 724,078 + +0.9 724,078 + -0.0 724,078 + -1.3 724,078 + +0.2 724,078 + +0.9 724,078 + -0.6 724,078 + -0.7 724,078 + +1.1 724,078 + +0.0 724,078 + +0.7 724,078 + +0.0 724,078 + -0.3 724,078 + -0.3 724,078 + +0.8 724,078 + +0.8 724,078 + -0.7 724,078 + +0.3 724,078 + +1.0 724,078 + +0.1 724,078 + +0.0 724,078 + -1.1 724,078 + +0.1 724,078 + +0.2 724,078 + +1.0 724,078 + +0.4 724,079 - +0.9 724,079 - -0.5 724,079 - +0.2 724,079 - +1.1 724,079 - +0.2 724,079 - -0.1 724,079 - -0.3 724,079 - -0.5 724,079 - -0.6 724,079 - +0.4 724,079 - +0.3 724,079 - -1.0 724,079 - -1.0 724,079 - -1.1 724,079 - -1.3 724,079 - +1.6 724,079 - -1.1 724,079 - -1.5 724,079 - -0.6 724,079 - -0.1 724,079 - +0.1 724,079 - +0.1 724,079 - +0.5 724,079 - -1.0 724,082 + -0.3 724,082 + +0.3 724,083 - +0.9 724,083 - +0.6 724,302 + AO353_03400 0.18 -2.2 724,303 - AO353_03400 0.18 -1.8 724,413 + AO353_03400 0.27 -0.5 724,413 + AO353_03400 0.27 -1.4 724,413 + AO353_03400 0.27 -1.7 724,413 + AO353_03400 0.27 +0.0 724,413 + AO353_03400 0.27 +0.2 724,414 - AO353_03400 0.27 -1.0 724,414 - AO353_03400 0.27 -0.9 724,414 - AO353_03400 0.27 -0.2 724,414 - AO353_03400 0.27 -0.7 724,414 - AO353_03400 0.27 +1.4 724,414 - AO353_03400 0.27 -0.3 724,414 - AO353_03400 0.27 -0.4 724,587 + AO353_03400 0.41 -0.4 724,587 + AO353_03400 0.41 +0.0 724,588 - AO353_03400 0.41 -0.3 724,588 - AO353_03400 0.41 +0.3 724,623 + AO353_03400 0.44 +0.5 724,624 - AO353_03400 0.44 -1.7 724,837 + AO353_03400 0.61 -2.0 724,838 - AO353_03400 0.61 -0.7 724,980 + AO353_03400 0.72 -0.7 724,980 + AO353_03400 0.72 -0.6 724,981 - AO353_03400 0.72 -2.2 724,981 - AO353_03400 0.72 -1.0 725,352 + +0.4 725,352 + -0.2 725,353 - -0.2 725,369 + +0.3 725,370 - +0.2 725,411 + -0.1 725,411 + -0.0 725,412 - +0.4 725,412 - +1.1 725,412 - +0.4 725,476 - -0.4 725,541 - -1.7 725,675 + AO353_03405 0.14 +0.4 725,675 + AO353_03405 0.14 +0.5 725,722 + AO353_03405 0.18 +0.4 725,842 + AO353_03405 0.26 +0.7 725,842 + AO353_03405 0.26 -0.5 725,843 - AO353_03405 0.26 +1.0 725,865 + AO353_03405 0.27 +0.4 725,865 + AO353_03405 0.27 -0.3 725,866 - AO353_03405 0.28 -1.1 726,113 + AO353_03405 0.44 +0.6 726,114 - AO353_03405 0.44 +0.9 726,251 + AO353_03405 0.54 +1.7 726,329 + AO353_03405 0.59 -2.3 726,329 + AO353_03405 0.59 +1.3 726,329 + AO353_03405 0.59 +0.6 726,329 + AO353_03405 0.59 +0.9 726,329 + AO353_03405 0.59 -1.8 726,331 + AO353_03405 0.59 -0.9 726,332 - AO353_03405 0.59 -1.5
Or see this region's nucleotide sequence