Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00760

Experiment: Chloramphenicol 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00755 and AO353_00760 are separated by 212 nucleotidesAO353_00760 and AO353_00765 are separated by 234 nucleotides AO353_00755: AO353_00755 - hypothetical protein, at 166,328 to 167,521 _00755 AO353_00760: AO353_00760 - hypothetical protein, at 167,734 to 168,078 _00760 AO353_00765: AO353_00765 - D-alanyl-D-alanine carboxypeptidase, at 168,313 to 169,773 _00765 Position (kb) 167 168 169Strain fitness (log2 ratio) -2 -1 0 1 2 3at 166.826 kb on + strand, within AO353_00755at 166.827 kb on - strand, within AO353_00755at 166.827 kb on - strand, within AO353_00755at 166.827 kb on - strand, within AO353_00755at 166.827 kb on - strand, within AO353_00755at 166.827 kb on - strand, within AO353_00755at 167.069 kb on + strand, within AO353_00755at 167.069 kb on + strand, within AO353_00755at 167.069 kb on + strand, within AO353_00755at 167.070 kb on - strand, within AO353_00755at 167.216 kb on + strand, within AO353_00755at 167.337 kb on + strand, within AO353_00755at 167.361 kb on + strand, within AO353_00755at 167.362 kb on - strand, within AO353_00755at 167.362 kb on - strand, within AO353_00755at 167.371 kb on + strand, within AO353_00755at 167.413 kb on + strandat 167.413 kb on + strandat 167.413 kb on + strandat 167.414 kb on - strandat 167.414 kb on - strandat 167.414 kb on - strandat 167.414 kb on - strandat 167.485 kb on + strandat 167.485 kb on + strandat 167.485 kb on + strandat 167.485 kb on + strandat 167.485 kb on + strandat 167.485 kb on + strandat 167.485 kb on + strandat 167.486 kb on - strandat 167.486 kb on - strandat 167.486 kb on - strandat 167.486 kb on - strandat 167.519 kb on + strandat 167.520 kb on - strandat 167.578 kb on + strandat 167.578 kb on + strandat 167.578 kb on + strandat 167.578 kb on + strandat 167.578 kb on + strandat 167.578 kb on + strandat 167.578 kb on + strandat 167.578 kb on + strandat 167.578 kb on + strandat 167.578 kb on + strandat 167.578 kb on + strandat 167.578 kb on + strandat 167.579 kb on - strandat 167.579 kb on - strandat 167.579 kb on - strandat 167.579 kb on - strandat 167.579 kb on - strandat 167.579 kb on - strandat 167.586 kb on + strandat 167.586 kb on + strandat 167.587 kb on - strandat 167.587 kb on - strandat 167.587 kb on - strandat 167.587 kb on - strandat 167.587 kb on - strandat 167.663 kb on + strandat 167.794 kb on + strand, within AO353_00760at 167.794 kb on + strand, within AO353_00760at 167.794 kb on + strand, within AO353_00760at 167.794 kb on + strand, within AO353_00760at 167.794 kb on + strand, within AO353_00760at 167.795 kb on - strand, within AO353_00760at 167.795 kb on - strand, within AO353_00760at 167.892 kb on - strand, within AO353_00760at 168.070 kb on - strandat 168.097 kb on + strandat 168.098 kb on - strandat 168.115 kb on + strandat 168.115 kb on + strandat 168.124 kb on - strandat 168.124 kb on - strandat 168.124 kb on - strandat 168.228 kb on + strandat 168.262 kb on + strandat 168.262 kb on + strandat 168.263 kb on - strandat 168.263 kb on - strandat 168.297 kb on + strandat 168.305 kb on + strandat 168.305 kb on + strandat 168.456 kb on - strandat 168.552 kb on + strand, within AO353_00765at 168.552 kb on + strand, within AO353_00765at 168.553 kb on - strand, within AO353_00765at 168.553 kb on - strand, within AO353_00765at 168.556 kb on + strand, within AO353_00765at 168.557 kb on - strand, within AO353_00765at 168.607 kb on + strand, within AO353_00765at 168.607 kb on + strand, within AO353_00765at 168.652 kb on + strand, within AO353_00765at 168.652 kb on + strand, within AO353_00765at 168.652 kb on + strand, within AO353_00765at 168.811 kb on - strand, within AO353_00765at 168.881 kb on + strand, within AO353_00765at 168.882 kb on - strand, within AO353_00765at 168.882 kb on - strand, within AO353_00765at 168.882 kb on - strand, within AO353_00765at 168.882 kb on - strand, within AO353_00765at 168.936 kb on + strand, within AO353_00765at 168.936 kb on + strand, within AO353_00765at 168.997 kb on + strand, within AO353_00765at 168.998 kb on - strand, within AO353_00765at 168.998 kb on - strand, within AO353_00765at 168.998 kb on - strand, within AO353_00765at 169.078 kb on + strand, within AO353_00765at 169.078 kb on + strand, within AO353_00765at 169.078 kb on + strand, within AO353_00765at 169.078 kb on + strand, within AO353_00765at 169.078 kb on + strand, within AO353_00765

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0025 mg/ml
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166,826 + AO353_00755 0.42 +0.2
166,827 - AO353_00755 0.42 +0.7
166,827 - AO353_00755 0.42 +0.4
166,827 - AO353_00755 0.42 +0.8
166,827 - AO353_00755 0.42 +1.3
166,827 - AO353_00755 0.42 -0.0
167,069 + AO353_00755 0.62 +0.6
167,069 + AO353_00755 0.62 -1.6
167,069 + AO353_00755 0.62 +1.0
167,070 - AO353_00755 0.62 +0.0
167,216 + AO353_00755 0.74 +0.5
167,337 + AO353_00755 0.85 +0.8
167,361 + AO353_00755 0.87 +0.5
167,362 - AO353_00755 0.87 -0.4
167,362 - AO353_00755 0.87 -0.1
167,371 + AO353_00755 0.87 +1.6
167,413 + -0.3
167,413 + +0.4
167,413 + -1.4
167,414 - +0.1
167,414 - +0.6
167,414 - -0.2
167,414 - -0.0
167,485 + -0.4
167,485 + +0.0
167,485 + -1.9
167,485 + +0.4
167,485 + +0.6
167,485 + +0.6
167,485 + -0.9
167,486 - +2.9
167,486 - +0.2
167,486 - +0.6
167,486 - -0.7
167,519 + +0.0
167,520 - -0.7
167,578 + -1.0
167,578 + -0.9
167,578 + -0.2
167,578 + +1.6
167,578 + -0.6
167,578 + -0.9
167,578 + +0.9
167,578 + +0.4
167,578 + -0.1
167,578 + -1.1
167,578 + +2.6
167,578 + +1.0
167,579 - +0.7
167,579 - +0.0
167,579 - +0.5
167,579 - +2.3
167,579 - +0.0
167,579 - -0.1
167,586 + +0.0
167,586 + -1.4
167,587 - +0.0
167,587 - +0.0
167,587 - +0.4
167,587 - -0.1
167,587 - +0.0
167,663 + -0.2
167,794 + AO353_00760 0.17 -0.2
167,794 + AO353_00760 0.17 -1.9
167,794 + AO353_00760 0.17 -0.4
167,794 + AO353_00760 0.17 +0.0
167,794 + AO353_00760 0.17 +0.4
167,795 - AO353_00760 0.18 +0.3
167,795 - AO353_00760 0.18 -0.4
167,892 - AO353_00760 0.46 -0.4
168,070 - -0.4
168,097 + -0.3
168,098 - +0.4
168,115 + -0.4
168,115 + +0.1
168,124 - +0.5
168,124 - -0.0
168,124 - +1.3
168,228 + +0.4
168,262 + +1.8
168,262 + -0.4
168,263 - +0.2
168,263 - -0.2
168,297 + -0.9
168,305 + +0.4
168,305 + +0.4
168,456 - +0.4
168,552 + AO353_00765 0.16 -1.0
168,552 + AO353_00765 0.16 +0.9
168,553 - AO353_00765 0.16 -0.7
168,553 - AO353_00765 0.16 +0.8
168,556 + AO353_00765 0.17 -0.2
168,557 - AO353_00765 0.17 -1.2
168,607 + AO353_00765 0.20 -0.8
168,607 + AO353_00765 0.20 -2.0
168,652 + AO353_00765 0.23 +1.3
168,652 + AO353_00765 0.23 -0.3
168,652 + AO353_00765 0.23 +3.4
168,811 - AO353_00765 0.34 -0.4
168,881 + AO353_00765 0.39 -1.7
168,882 - AO353_00765 0.39 +1.6
168,882 - AO353_00765 0.39 +0.3
168,882 - AO353_00765 0.39 -0.5
168,882 - AO353_00765 0.39 -0.3
168,936 + AO353_00765 0.43 -0.1
168,936 + AO353_00765 0.43 -1.0
168,997 + AO353_00765 0.47 -0.2
168,998 - AO353_00765 0.47 -1.0
168,998 - AO353_00765 0.47 -0.5
168,998 - AO353_00765 0.47 +0.2
169,078 + AO353_00765 0.52 -0.1
169,078 + AO353_00765 0.52 -1.9
169,078 + AO353_00765 0.52 -0.4
169,078 + AO353_00765 0.52 +0.3
169,078 + AO353_00765 0.52 +0.6

Or see this region's nucleotide sequence