Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3007

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3005 and DvMF_3006 are separated by 108 nucleotidesDvMF_3006 and thiE are separated by 5 nucleotidesthiE and DvMF_3008 are separated by 227 nucleotidesDvMF_3008 and DvMF_3009 are separated by 99 nucleotides DvMF_3005: DvMF_3005 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 3,792,047 to 3,793,507 _3005 DvMF_3006: DvMF_3006 - hydroxyethylthiazole kinase (RefSeq), at 3,793,616 to 3,794,419 _3006 DvMF_3007: thiE - thiamine-phosphate pyrophosphorylase (RefSeq), at 3,794,425 to 3,795,066 thiE DvMF_3008: DvMF_3008 - Dinitrogenase iron-molybdenum cofactor biosynthesis protein (RefSeq), at 3,795,294 to 3,795,629 _3008 DvMF_3009: DvMF_3009 - oxidoreductase FAD/NAD(P)-binding domain protein (RefSeq), at 3,795,729 to 3,796,493 _3009 Position (kb) 3794 3795 3796Strain fitness (log2 ratio) -1 0 1at 3794.042 kb on - strand, within DvMF_3006at 3794.198 kb on + strand, within DvMF_3006at 3794.653 kb on + strand, within thiEat 3794.942 kb on - strand, within thiEat 3794.985 kb on - strand, within thiEat 3795.080 kb on - strandat 3795.129 kb on - strandat 3795.200 kb on + strandat 3795.221 kb on + strandat 3795.221 kb on + strandat 3795.701 kb on + strandat 3795.712 kb on + strandat 3795.720 kb on - strandat 3795.834 kb on + strand, within DvMF_3009at 3795.925 kb on + strand, within DvMF_3009

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,794,042 - DvMF_3006 0.53 -1.4
3,794,198 + DvMF_3006 0.72 -0.1
3,794,653 + thiE DvMF_3007 0.36 -0.1
3,794,942 - thiE DvMF_3007 0.81 -0.2
3,794,985 - thiE DvMF_3007 0.87 -0.5
3,795,080 - -0.1
3,795,129 - -0.3
3,795,200 + -0.4
3,795,221 + +0.0
3,795,221 + -0.0
3,795,701 + -1.2
3,795,712 + -1.2
3,795,720 - -0.2
3,795,834 + DvMF_3009 0.14 -0.1
3,795,925 + DvMF_3009 0.26 -0.2

Or see this region's nucleotide sequence