Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1966

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1965 and DvMF_1966 are separated by 238 nucleotidesDvMF_1966 and DvMF_1967 are separated by 143 nucleotides DvMF_1965: DvMF_1965 - class II aldolase/adducin family protein (RefSeq), at 2,427,647 to 2,428,804 _1965 DvMF_1966: DvMF_1966 - thiamine-monophosphate kinase (RefSeq), at 2,429,043 to 2,430,140 _1966 DvMF_1967: DvMF_1967 - UvrD/REP helicase (RefSeq), at 2,430,284 to 2,432,653 _1967 Position (kb) 2429 2430 2431Strain fitness (log2 ratio) -1 0 1at 2428.045 kb on - strand, within DvMF_1965at 2428.092 kb on - strand, within DvMF_1965at 2428.110 kb on + strand, within DvMF_1965at 2428.115 kb on + strand, within DvMF_1965at 2428.127 kb on + strand, within DvMF_1965at 2428.223 kb on + strand, within DvMF_1965at 2428.360 kb on + strand, within DvMF_1965at 2428.527 kb on + strand, within DvMF_1965at 2428.569 kb on - strand, within DvMF_1965at 2429.081 kb on + strandat 2429.081 kb on + strandat 2429.089 kb on - strandat 2430.158 kb on - strandat 2430.171 kb on - strandat 2430.379 kb on - strandat 2430.514 kb on - strandat 2430.684 kb on - strand, within DvMF_1967at 2430.827 kb on + strand, within DvMF_1967at 2430.857 kb on - strand, within DvMF_1967at 2430.971 kb on + strand, within DvMF_1967at 2430.997 kb on - strand, within DvMF_1967at 2431.021 kb on + strand, within DvMF_1967at 2431.095 kb on + strand, within DvMF_1967

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,428,045 - DvMF_1965 0.34 -0.3
2,428,092 - DvMF_1965 0.38 -0.1
2,428,110 + DvMF_1965 0.40 -0.2
2,428,115 + DvMF_1965 0.40 -0.3
2,428,127 + DvMF_1965 0.41 -0.4
2,428,223 + DvMF_1965 0.50 -0.0
2,428,360 + DvMF_1965 0.62 -0.1
2,428,527 + DvMF_1965 0.76 -0.1
2,428,569 - DvMF_1965 0.80 -0.2
2,429,081 + +0.3
2,429,081 + -0.4
2,429,089 - +0.2
2,430,158 - -0.2
2,430,171 - -0.3
2,430,379 - -0.7
2,430,514 - -0.4
2,430,684 - DvMF_1967 0.17 -0.5
2,430,827 + DvMF_1967 0.23 -0.2
2,430,857 - DvMF_1967 0.24 -0.5
2,430,971 + DvMF_1967 0.29 -1.1
2,430,997 - DvMF_1967 0.30 -0.1
2,431,021 + DvMF_1967 0.31 +0.4
2,431,095 + DvMF_1967 0.34 -0.5

Or see this region's nucleotide sequence