Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1738

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1737 and DvMF_1738 are separated by 116 nucleotidesDvMF_1738 and DvMF_1739 are separated by 315 nucleotides DvMF_1737: DvMF_1737 - metallophosphoesterase (RefSeq), at 2,124,207 to 2,124,935 _1737 DvMF_1738: DvMF_1738 - hypothetical protein (RefSeq), at 2,125,052 to 2,125,678 _1738 DvMF_1739: DvMF_1739 - isocitrate/isopropylmalate dehydrogenase (RefSeq), at 2,125,994 to 2,127,142 _1739 Position (kb) 2125 2126Strain fitness (log2 ratio) -1 0 1at 2124.081 kb on + strandat 2124.089 kb on - strandat 2124.201 kb on - strandat 2124.213 kb on - strandat 2124.470 kb on + strand, within DvMF_1737at 2124.501 kb on + strand, within DvMF_1737at 2124.568 kb on - strand, within DvMF_1737at 2124.797 kb on - strand, within DvMF_1737at 2125.373 kb on - strand, within DvMF_1738at 2125.439 kb on - strand, within DvMF_1738at 2125.439 kb on - strand, within DvMF_1738at 2125.454 kb on - strand, within DvMF_1738at 2125.464 kb on - strand, within DvMF_1738at 2125.477 kb on - strand, within DvMF_1738at 2125.548 kb on + strand, within DvMF_1738at 2125.715 kb on + strandat 2125.776 kb on + strandat 2125.975 kb on + strandat 2126.193 kb on + strand, within DvMF_1739

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,124,081 + -0.3
2,124,089 - -0.3
2,124,201 - -0.0
2,124,213 - -0.2
2,124,470 + DvMF_1737 0.36 -1.0
2,124,501 + DvMF_1737 0.40 -1.2
2,124,568 - DvMF_1737 0.50 -1.2
2,124,797 - DvMF_1737 0.81 -1.4
2,125,373 - DvMF_1738 0.51 -0.1
2,125,439 - DvMF_1738 0.62 +0.6
2,125,439 - DvMF_1738 0.62 -0.3
2,125,454 - DvMF_1738 0.64 -0.7
2,125,464 - DvMF_1738 0.66 -0.7
2,125,477 - DvMF_1738 0.68 +0.1
2,125,548 + DvMF_1738 0.79 -0.2
2,125,715 + -1.0
2,125,776 + +0.6
2,125,975 + -1.1
2,126,193 + DvMF_1739 0.17 -0.2

Or see this region's nucleotide sequence