Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1376

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1375 and DvMF_1376 are separated by 359 nucleotidesDvMF_1376 and DvMF_1377 are separated by 271 nucleotides DvMF_1375: DvMF_1375 - histidine kinase (RefSeq), at 1,683,633 to 1,684,976 _1375 DvMF_1376: DvMF_1376 - phosphomethylpyrimidine kinase (RefSeq), at 1,685,336 to 1,686,184 _1376 DvMF_1377: DvMF_1377 - gamma-glutamyl kinase (RefSeq), at 1,686,456 to 1,687,643 _1377 Position (kb) 1685 1686 1687Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1684.391 kb on + strand, within DvMF_1375at 1684.576 kb on - strand, within DvMF_1375at 1684.605 kb on - strand, within DvMF_1375at 1684.630 kb on - strand, within DvMF_1375at 1684.765 kb on - strand, within DvMF_1375at 1684.802 kb on + strand, within DvMF_1375at 1685.111 kb on + strandat 1685.167 kb on - strandat 1685.359 kb on - strandat 1686.198 kb on + strandat 1686.206 kb on - strandat 1686.390 kb on + strandat 1686.390 kb on + strandat 1686.448 kb on - strandat 1686.615 kb on - strand, within DvMF_1377at 1686.669 kb on + strand, within DvMF_1377at 1686.699 kb on + strand, within DvMF_1377at 1686.985 kb on - strand, within DvMF_1377at 1687.018 kb on + strand, within DvMF_1377at 1687.175 kb on + strand, within DvMF_1377

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,684,391 + DvMF_1375 0.56 +0.1
1,684,576 - DvMF_1375 0.70 +0.8
1,684,605 - DvMF_1375 0.72 +0.8
1,684,630 - DvMF_1375 0.74 +0.1
1,684,765 - DvMF_1375 0.84 -0.1
1,684,802 + DvMF_1375 0.87 +0.1
1,685,111 + +0.1
1,685,167 - -0.2
1,685,359 - -0.2
1,686,198 + -1.2
1,686,206 - +0.0
1,686,390 + +0.1
1,686,390 + -1.1
1,686,448 - -0.2
1,686,615 - DvMF_1377 0.13 -6.2
1,686,669 + DvMF_1377 0.18 -3.8
1,686,699 + DvMF_1377 0.20 -5.2
1,686,985 - DvMF_1377 0.45 -5.3
1,687,018 + DvMF_1377 0.47 -5.7
1,687,175 + DvMF_1377 0.61 -4.7

Or see this region's nucleotide sequence